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Sodium in PDB 1t3p: Half-Sandwich Arene Ruthenium(II)-Enzyme Complex

Enzymatic activity of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex

All present enzymatic activity of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex:
3.2.1.17;

Protein crystallography data

The structure of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex, PDB code: 1t3p was solved by I.W.Mcnae, K.Fishburne, A.Habtemariam, T.M.Hunter, M.Melchart, F.Wang, M.D.Walkinshaw, P.J.Sadler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.80 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.142, 80.142, 37.064, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.7

Other elements in 1t3p:

The structure of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex also contains other interesting chemical elements:

Ruthenium (Ru) 1 atom
Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Half-Sandwich Arene Ruthenium(II)-Enzyme Complex (pdb code 1t3p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Half-Sandwich Arene Ruthenium(II)-Enzyme Complex, PDB code: 1t3p:

Sodium binding site 1 out of 1 in 1t3p

Go back to Sodium Binding Sites List in 1t3p
Sodium binding site 1 out of 1 in the Half-Sandwich Arene Ruthenium(II)-Enzyme Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na232

b:13.8
occ:1.00
O A:HOH314 2.3 13.9 1.0
O A:SER60 2.4 14.7 1.0
O A:ARG73 2.4 17.9 1.0
O A:HOH306 2.4 12.5 1.0
O A:CYS64 2.5 10.7 1.0
OG A:SER72 2.5 15.4 1.0
CB A:SER72 3.3 16.1 1.0
C A:SER60 3.5 13.1 1.0
C A:ARG73 3.5 18.1 1.0
C A:CYS64 3.5 10.4 1.0
CA A:ASN65 3.9 10.7 1.0
CA A:SER60 4.0 11.6 1.0
N A:ARG73 4.0 18.0 1.0
N A:ASN65 4.1 11.0 1.0
C A:SER72 4.2 17.7 1.0
CB A:SER60 4.2 11.5 1.0
CA A:ARG73 4.3 18.8 1.0
CA A:SER72 4.4 17.1 1.0
N A:ASN74 4.4 17.0 1.0
N A:CYS64 4.5 11.3 1.0
O A:HOH413 4.5 27.9 1.0
CA A:ASN74 4.6 16.7 1.0
N A:ASP66 4.6 11.1 1.0
N A:ARG61 4.6 13.7 1.0
OD1 A:ASN65 4.6 15.2 1.0
O A:SER72 4.6 17.9 1.0
CA A:CYS64 4.7 10.9 1.0
CL A:CL231 4.7 16.0 1.0
CB A:ASN74 4.7 16.6 1.0
C A:ARG61 4.7 14.8 1.0
CB A:THR69 4.7 13.3 1.0
O A:ARG61 4.7 15.9 1.0
CB A:ASN65 4.7 10.6 1.0
C A:ASN65 4.8 10.4 1.0
N A:TRP62 4.9 15.4 1.0
O A:HOH353 4.9 23.2 1.0
CA A:ARG61 5.0 15.3 1.0
O A:THR69 5.0 14.6 1.0

Reference:

I.W.Mcnae, K.Fishburne, A.Habtemariam, T.M.Hunter, M.Melchart, F.Wang, M.D.Walkinshaw, P.J.Sadler. Half-Sandwich Arene Ruthenium(II)-Enzyme Complex Chem.Commun.(Camb.) V. 16 1786 2004.
ISSN: ISSN 1359-7345
PubMed: 15306883
DOI: 10.1039/B408141B
Page generated: Tue Dec 15 05:36:14 2020

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