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Sodium in PDB 1ss4: Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus

Protein crystallography data

The structure of Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus, PDB code: 1ss4 was solved by Y.Kim, H.Li, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.57 / 1.84
Space group P 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 60.240, 66.093, 102.212, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 23.8

Other elements in 1ss4:

The structure of Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus (pdb code 1ss4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus, PDB code: 1ss4:

Sodium binding site 1 out of 1 in 1ss4

Go back to Sodium Binding Sites List in 1ss4
Sodium binding site 1 out of 1 in the Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:12.0
occ:0.50
O A:ASP82 2.4 21.6 1.0
O A:HOH458 2.6 23.4 1.0
O B:HOH569 2.9 49.0 1.0
O A:HOH467 3.0 36.1 1.0
C A:ASP82 3.6 19.4 1.0
O A:HOH432 4.0 24.1 1.0
O1 B:FMT401 4.0 28.4 0.9
CA A:HIS83 4.4 17.7 1.0
N A:HIS83 4.5 15.4 1.0
N A:ASP82 4.5 17.7 1.0
CA A:ASP82 4.6 19.0 1.0
C B:FMT401 4.6 23.3 0.9
O A:HOH473 4.7 27.1 1.0
O A:HOH434 4.7 24.3 1.0
CB A:ASP82 4.8 20.6 1.0
CB A:HIS83 5.0 20.1 1.0

Reference:

Y.Kim, H.Li, A.Joachimiak. Crystal Structure of the Glyoxalase Family Protein APC24694 From Bacillus Cereus To Be Published.
Page generated: Sun Oct 6 22:26:01 2024

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