Sodium in PDB 1sk4: Crystal Structure of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha

The structure of Crystal Structure of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha, PDB code: 1sk4 was solved by R.Guan, E.L.Malchiodi, W.Qian, P.Schuck, R.A.Mariuzza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.79 / 1.65
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	64.464, 64.464, 63.996, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 21.2

The binding sites of Sodium atom in the Crystal Structure of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha (pdb code 1sk4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha, PDB code: 1sk4:

Sodium binding site 1 out of 1 in the Crystal Structure of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha within 5.0Å range: probe atom residue distance (Å) B Occ A:Na342 b:15.3 occ:1.00 O A:ILE322 2.3 13.5 1.0 O A:SER317 2.3 13.7 1.0 OG A:SER324 2.4 14.7 1.0 O A:HOH36 2.4 18.4 1.0 O A:VAL319 2.4 15.4 1.0 CB A:SER324 3.2 13.1 1.0 C A:VAL319 3.4 16.2 1.0 C A:ILE322 3.4 13.7 1.0 C A:SER317 3.5 14.3 1.0 C A:ASP318 3.7 13.5 1.0 NE2 A:GLN327 3.7 17.6 1.0 O A:ASP318 3.9 14.9 1.0 N A:VAL319 3.9 13.4 1.0 CA A:ASP318 4.0 14.1 1.0 CA A:VAL320 4.0 16.4 1.0 N A:SER324 4.0 13.2 1.0 N A:ILE322 4.1 15.0 1.0 CB A:ILE322 4.1 14.6 1.0 N A:VAL320 4.1 16.5 1.0 CA A:ILE322 4.1 14.7 1.0 CD A:GLN327 4.2 15.8 1.0 N A:ASP318 4.2 13.2 1.0 C A:VAL320 4.2 16.1 1.0 O A:VAL320 4.3 16.4 1.0 O A:HOH39 4.3 23.1 1.0 CA A:SER324 4.3 13.7 1.0 OE1 A:GLN327 4.4 18.8 1.0 CA A:VAL319 4.4 15.1 1.0 C A:LEU323 4.4 13.5 1.0 N A:LEU323 4.5 13.5 1.0 CA A:SER317 4.7 13.5 1.0 CG2 A:ILE322 4.7 14.9 1.0 O A:HOH34 4.7 17.8 1.0 CA A:LEU323 4.8 13.0 1.0 O A:HOH38 4.8 25.1 1.0 N A:ASN321 4.9 15.3 1.0 O A:LEU323 5.0 13.7 1.0

R.Guan, E.L.Malchiodi, W.Qian, P.Schuck, R.A.Mariuzza. Crystal Structure of the C-Terminal Peptidoglycan-Binding Domain of Human Peptidoglycan Recognition Protein Ialpha J.Biol.Chem. V. 279 31873 2004.
ISSN: ISSN 0021-9258
PubMed: 15140887
DOI: 10.1074/JBC.M404920200