Sodium in PDB 1s9z: Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil at Ambient Temperature and Aggregates Into Amyloid-Like Fibrils at Higher Temperatures.

The structure of Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil at Ambient Temperature and Aggregates Into Amyloid-Like Fibrils at Higher Temperatures., PDB code: 1s9z was solved by R.A.Kammerer, D.Kostrewa, J.Zurdo, A.Detken, C.Garcia-Echeverria, J.D.Green, S.A.Muller, B.H.Meier, F.K.Winkler, C.M.Dobson, M.O.Steinmetz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.54 / 2.01
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	22.274, 22.274, 52.547, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 23.3

The structure of Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil at Ambient Temperature and Aggregates Into Amyloid-Like Fibrils at Higher Temperatures. also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil at Ambient Temperature and Aggregates Into Amyloid-Like Fibrils at Higher Temperatures. (pdb code 1s9z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil at Ambient Temperature and Aggregates Into Amyloid-Like Fibrils at Higher Temperatures., PDB code: 1s9z:

Sodium binding site 1 out of 1 in the Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil at Ambient Temperature and Aggregates Into Amyloid-Like Fibrils at Higher Temperatures.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Synthetic 17 Amino Acid Long Peptide That Forms A Native-Like Coiled- Coil at Ambient Temperature and Aggregates Into Amyloid-Like Fibrils at Higher Temperatures. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na101 b:37.7 occ:0.33 OE1 A:GLU5 2.3 0.4 1.0 OE2 A:GLU5 2.9 73.7 1.0 CD A:GLU5 2.9 83.3 1.0 O A:HOH103 3.3 24.2 0.3 CG A:GLU5 4.3 37.1 1.0 CB A:ALA8 4.5 25.6 1.0 O A:HOH108 4.6 41.8 1.0

R.A.Kammerer, D.Kostrewa, J.Zurdo, A.Detken, J.D.Green, B.H.Meier, F.K.Winkler, C.M.Dobson, M.O.Steinmetz. Exploring Amyloid Formation By A De Novo Design Proc.Natl.Acad.Sci.Usa V. 101 4435 2004.
ISSN: ISSN 0027-8424
PubMed: 15070736
DOI: 10.1073/PNAS.0306786101