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Sodium in PDB 1rlh: Structure of A Conserved Protein From Thermoplasma Acidophilum

Protein crystallography data

The structure of Structure of A Conserved Protein From Thermoplasma Acidophilum, PDB code: 1rlh was solved by M.E.Cuff, X.Xu, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.90 / 1.80
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 74.329, 74.329, 50.840, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 20.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Conserved Protein From Thermoplasma Acidophilum (pdb code 1rlh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Conserved Protein From Thermoplasma Acidophilum, PDB code: 1rlh:

Sodium binding site 1 out of 1 in 1rlh

Go back to Sodium Binding Sites List in 1rlh
Sodium binding site 1 out of 1 in the Structure of A Conserved Protein From Thermoplasma Acidophilum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Conserved Protein From Thermoplasma Acidophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na522

b:56.8
occ:0.33
O A:LEU122 2.3 13.3 1.0
O A:HOH539 2.5 11.6 1.0
C A:LEU122 3.1 13.4 1.0
CA A:LEU122 3.7 14.5 1.0
O A:HOH524 3.7 19.0 1.0
N A:GLY123 4.2 14.5 1.0
O A:VAL121 4.5 14.5 1.0
CA A:GLY123 4.5 14.1 1.0
CB A:LEU122 4.5 14.9 1.0
N A:LEU122 4.9 13.3 1.0

Reference:

M.E.Cuff, X.Xu, A.Savchenko, A.Edwards, A.Joachimiak. Structure of A Conserved Protein From T. Acidophilum To Be Published.
Page generated: Sun Oct 6 22:00:56 2024

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