Sodium in PDB 1qut: The Soluble Lytic Transglycosylase SLT35 From Escherichia Coli in Complex with N-Acetylglucosamine

The structure of The Soluble Lytic Transglycosylase SLT35 From Escherichia Coli in Complex with N-Acetylglucosamine, PDB code: 1qut was solved by E.J.Van Asselt, A.J.Dijkstra, K.H.Kalk, B.Takacs, W.Keck, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.44
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.330, 67.848, 98.629, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 25.6

The binding sites of Sodium atom in the The Soluble Lytic Transglycosylase SLT35 From Escherichia Coli in Complex with N-Acetylglucosamine (pdb code 1qut). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Soluble Lytic Transglycosylase SLT35 From Escherichia Coli in Complex with N-Acetylglucosamine, PDB code: 1qut:

Sodium binding site 1 out of 1 in the The Soluble Lytic Transglycosylase SLT35 From Escherichia Coli in Complex with N-Acetylglucosamine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Soluble Lytic Transglycosylase SLT35 From Escherichia Coli in Complex with N-Acetylglucosamine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na400 b:10.7 occ:1.00 O A:HIS243 2.3 17.8 1.0 OD1 A:ASP241 2.4 13.2 1.0 OD2 A:ASP251 2.4 18.0 1.0 OD1 A:ASP237 2.5 21.2 1.0 OD1 A:ASP251 2.5 20.1 1.0 OG A:SER239 2.6 8.7 1.0 O A:HOH574 2.7 24.2 1.0 CG A:ASP251 2.8 18.5 1.0 CG A:ASP241 3.4 14.2 1.0 C A:HIS243 3.4 15.1 1.0 CG A:ASP237 3.5 20.6 1.0 CB A:SER239 3.6 9.5 1.0 OD2 A:ASP241 3.8 14.3 1.0 CA A:ASP237 3.9 17.5 1.0 N A:SER239 3.9 13.2 1.0 CB A:ASP237 4.1 18.4 1.0 CA A:SER239 4.2 12.6 1.0 N A:HIS243 4.2 14.8 1.0 N A:ASP241 4.2 13.0 1.0 N A:GLY240 4.3 13.9 1.0 C A:ASP237 4.3 18.1 1.0 CB A:ASP251 4.3 16.8 1.0 N A:ILE244 4.3 16.5 1.0 CA A:HIS243 4.3 15.6 1.0 CA A:ILE244 4.4 16.0 1.0 N A:PHE238 4.4 16.7 1.0 C A:SER239 4.5 13.3 1.0 N A:ASN245 4.5 17.8 1.0 CB A:ASP241 4.6 11.0 1.0 OD2 A:ASP237 4.6 22.6 1.0 CB A:HIS243 4.8 15.9 1.0 CA A:ASP241 4.9 11.9 1.0 N A:GLY242 4.9 10.3 1.0 O A:ASP237 5.0 19.6 1.0

E.J.Van Asselt, A.J.Dijkstra, K.H.Kalk, B.Takacs, W.Keck, B.W.Dijkstra. Crystal Structure of Escherichia Coli Lytic Transglycosylase SLT35 Reveals A Lysozyme-Like Catalytic Domain with An Ef-Hand. Structure Fold.Des. V. 7 1167 1999.
ISSN: ISSN 0969-2126
PubMed: 10545329
DOI: 10.1016/S0969-2126(00)80051-9