Sodium in PDB 1qus: 1.7 A Resolution Structure of the Soluble Lytic Transglycosylase SLT35 From Escherichia Coli

The structure of 1.7 A Resolution Structure of the Soluble Lytic Transglycosylase SLT35 From Escherichia Coli, PDB code: 1qus was solved by E.J.Van Asselt, A.J.Dijkstra, K.H.Kalk, B.Takacs, W.Keck, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.329, 67.883, 98.853, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 20.7

The binding sites of Sodium atom in the 1.7 A Resolution Structure of the Soluble Lytic Transglycosylase SLT35 From Escherichia Coli (pdb code 1qus). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.7 A Resolution Structure of the Soluble Lytic Transglycosylase SLT35 From Escherichia Coli, PDB code: 1qus:

Sodium binding site 1 out of 1 in the 1.7 A Resolution Structure of the Soluble Lytic Transglycosylase SLT35 From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.7 A Resolution Structure of the Soluble Lytic Transglycosylase SLT35 From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Na400 b:16.0 occ:1.00 OD1 A:ASP237 2.3 15.9 1.0 O A:HIS243 2.3 18.0 1.0 OD1 A:ASP241 2.4 13.3 1.0 OD1 A:ASP251 2.5 17.7 1.0 OD2 A:ASP251 2.5 14.7 1.0 OG A:SER239 2.5 13.6 1.0 CG A:ASP251 2.9 16.3 1.0 CG A:ASP237 3.3 21.3 1.0 O A:HOH574 3.3 26.9 1.0 CG A:ASP241 3.3 17.4 1.0 C A:HIS243 3.4 18.6 1.0 CB A:SER239 3.6 15.2 1.0 CA A:ASP237 3.8 16.1 1.0 OD2 A:ASP241 3.8 23.3 1.0 N A:SER239 3.9 14.3 1.0 CB A:ASP237 3.9 13.7 1.0 N A:HIS243 4.0 17.2 1.0 N A:ASP241 4.0 16.4 1.0 N A:GLY240 4.1 16.2 1.0 OD2 A:ASP237 4.2 16.9 1.0 CA A:SER239 4.2 15.9 1.0 C A:ASP237 4.2 17.1 1.0 CA A:HIS243 4.2 18.1 1.0 N A:PHE238 4.2 14.9 1.0 N A:ILE244 4.3 15.4 1.0 CB A:ASP251 4.4 12.1 1.0 CA A:ILE244 4.4 16.4 1.0 CB A:ASP241 4.5 14.7 1.0 C A:SER239 4.5 17.8 1.0 N A:GLY242 4.6 15.1 1.0 CA A:ASP241 4.6 14.4 1.0 CB A:HIS243 4.7 20.4 1.0 N A:ASN245 4.8 16.5 1.0 C A:ASP241 4.9 14.6 1.0 C A:GLY240 5.0 18.1 1.0 C A:PHE238 5.0 15.5 1.0 CA A:GLY240 5.0 17.4 1.0 O A:ASP237 5.0 18.4 1.0

E.J.Van Asselt, A.J.Dijkstra, K.H.Kalk, B.Takacs, W.Keck, B.W.Dijkstra. Crystal Structure of Escherichia Coli Lytic Transglycosylase SLT35 Reveals A Lysozyme-Like Catalytic Domain with An Ef-Hand. Structure Fold.Des. V. 7 1167 1999.
ISSN: ISSN 0969-2126
PubMed: 10545329
DOI: 10.1016/S0969-2126(00)80051-9