Sodium in PDB 1qsx: Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex

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>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Sodium atom in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex (pdb code 1qsx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 19 binding sites of Sodium where determined in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex, PDB code: 1qsx:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na27 b:10.0 occ:1.00 H42 B:DC19 3.8 10.0 1.0 H41 B:DC19 4.1 10.0 1.0 O6 A:DG6 4.2 10.0 1.0 N4 B:DC19 4.3 10.0 1.0 H72 A:DT5 4.5 10.0 1.0 H73 B:DT17 4.5 10.0 1.0 O4 A:DT5 4.7 10.0 1.0 O6 B:DG18 4.7 10.0 1.0 N7 B:DG18 4.7 10.0 1.0

Sodium binding site 2 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range:

Sodium binding site 3 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na29 b:10.0 occ:1.00 H5'' A:DT4 3.3 10.0 1.0 C5' A:DT4 4.3 10.0 1.0 H5 B:HT25 4.4 10.0 1.0 H4' A:DT4 4.5 10.0 1.0 H5' A:DT4 4.5 10.0 1.0 O3' A:DT4 4.7 10.0 1.0 OP1 A:DT4 4.8 10.0 1.0 H10 B:HT25 4.9 10.0 1.0 C4' A:DT4 4.9 10.0 1.0 OP1 A:DT5 4.9 10.0 1.0

Sodium binding site 4 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range:

Sodium binding site 5 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range:

Sodium binding site 6 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range:

Sodium binding site 7 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na33 b:10.0 occ:1.00 H2' A:DA8 4.7 10.0 1.0 OP2 A:DA9 4.8 10.0 1.0 H8 A:DA9 4.8 10.0 1.0 H2'' A:DA8 4.9 10.0 1.0

Sodium binding site 8 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range:

Sodium binding site 9 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range:

Sodium binding site 10 out of 19 in the Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of Solution uc(Nmr) Structure of the 2:1 Hoechst 33258- D(Cttttgcaaaag)2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na36 b:10.0 occ:1.00 OP1 A:DT5 4.5 10.0 1.0

E.Gavathiotis, G.J.Sharman, M.S.Searle. Sequence-Dependent Variation in Dna Minor Groove Width Dictates Orientational Preference of Hoechst 33258 in A-Tract Recognition: Solution uc(Nmr) Structure of the 2:1 Complex with D(Cttttgcaaaag)(2). Nucleic Acids Res. V. 28 728 2000.
ISSN: ISSN 0305-1048
PubMed: 10637324
DOI: 10.1093/NAR/28.3.728