Atomistry » Sodium » PDB 1ph7-1qsx » 1qrv
Atomistry »
  Sodium »
    PDB 1ph7-1qsx »
      1qrv »

Sodium in PDB 1qrv: Crystal Structure of the Complex of Hmg-D and Dna

Protein crystallography data

The structure of Crystal Structure of the Complex of Hmg-D and Dna, PDB code: 1qrv was solved by F.V.Murphy Iv, R.M.Sweet, M.E.A.Churchill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.740, 53.797, 86.843, 90.00, 90.00, 90.00
R / Rfree (%) 23.8 / 28.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Complex of Hmg-D and Dna (pdb code 1qrv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Complex of Hmg-D and Dna, PDB code: 1qrv:

Sodium binding site 1 out of 1 in 1qrv

Go back to Sodium Binding Sites List in 1qrv
Sodium binding site 1 out of 1 in the Crystal Structure of the Complex of Hmg-D and Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Complex of Hmg-D and Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na501

b:21.2
occ:1.00
OP1 C:DA6 2.8 23.1 1.0
O5' C:DA6 3.7 19.6 1.0
P C:DA6 3.7 21.4 1.0
CG A:ARG44 3.8 23.9 1.0
C5' C:DA6 4.0 22.5 1.0
CD A:ARG44 4.0 21.6 1.0
C3' C:DA6 4.2 22.4 1.0
OP2 C:DT7 4.2 32.3 1.0
OP2 C:DA6 4.3 25.2 1.0
C4' C:DA6 4.7 20.3 1.0

Reference:

F.V.Murphy Iv, R.M.Sweet, M.E.Churchill. The Structure of A Chromosomal High Mobility Group Protein-Dna Complex Reveals Sequence-Neutral Mechanisms Important For Non-Sequence-Specific Dna Recognition. Embo J. V. 18 6610 1999.
ISSN: ISSN 0261-4189
PubMed: 10581235
DOI: 10.1093/EMBOJ/18.23.6610
Page generated: Sun Oct 6 21:32:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy