Sodium in PDB 1qrv: Crystal Structure of the Complex of Hmg-D and Dna

The structure of Crystal Structure of the Complex of Hmg-D and Dna, PDB code: 1qrv was solved by F.V.Murphy Iv, R.M.Sweet, M.E.A.Churchill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.740, 53.797, 86.843, 90.00, 90.00, 90.00
R / Rfree (%)	23.8 / 28.8

The binding sites of Sodium atom in the Crystal Structure of the Complex of Hmg-D and Dna (pdb code 1qrv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Complex of Hmg-D and Dna, PDB code: 1qrv:

Sodium binding site 1 out of 1 in the Crystal Structure of the Complex of Hmg-D and Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Complex of Hmg-D and Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Na501 b:21.2 occ:1.00 OP1 C:DA6 2.8 23.1 1.0 O5' C:DA6 3.7 19.6 1.0 P C:DA6 3.7 21.4 1.0 CG A:ARG44 3.8 23.9 1.0 C5' C:DA6 4.0 22.5 1.0 CD A:ARG44 4.0 21.6 1.0 C3' C:DA6 4.2 22.4 1.0 OP2 C:DT7 4.2 32.3 1.0 OP2 C:DA6 4.3 25.2 1.0 C4' C:DA6 4.7 20.3 1.0

F.V.Murphy Iv, R.M.Sweet, M.E.Churchill. The Structure of A Chromosomal High Mobility Group Protein-Dna Complex Reveals Sequence-Neutral Mechanisms Important For Non-Sequence-Specific Dna Recognition. Embo J. V. 18 6610 1999.
ISSN: ISSN 0261-4189
PubMed: 10581235
DOI: 10.1093/EMBOJ/18.23.6610