Sodium in PDB 1qnx: Ves V 5, An Allergen From Vespula Vulgaris Venom

The structure of Ves V 5, An Allergen From Vespula Vulgaris Venom, PDB code: 1qnx was solved by A.Henriksen, M.Gajhede, M.D.Spangfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.359, 62.179, 82.777, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 23.6

The binding sites of Sodium atom in the Ves V 5, An Allergen From Vespula Vulgaris Venom (pdb code 1qnx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ves V 5, An Allergen From Vespula Vulgaris Venom, PDB code: 1qnx:

Sodium binding site 1 out of 1 in the Ves V 5, An Allergen From Vespula Vulgaris Venom


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ves V 5, An Allergen From Vespula Vulgaris Venom within 5.0Å range: probe atom residue distance (Å) B Occ A:Na458 b:27.1 occ:1.00 O A:GLY63 2.5 16.4 1.0 O A:HOH2135 2.6 21.0 1.0 O A:HOH2129 2.6 20.1 1.0 O A:HOH2203 2.7 17.7 1.0 C A:GLY63 3.7 16.4 1.0 O A:HOH2126 3.9 33.5 1.0 O A:HOH2107 4.3 24.1 1.0 N A:GLY63 4.3 16.1 1.0 CA A:ASN64 4.4 17.2 1.0 N A:GLY66 4.5 17.4 1.0 N A:ASN64 4.5 16.6 1.0 O A:HOH2065 4.5 31.0 1.0 CA A:PRO65 4.5 17.3 1.0 O A:LYS138 4.6 15.5 1.0 CA A:GLY63 4.7 16.3 1.0 OD1 A:ASN64 4.8 20.0 1.0 O A:HOH2064 4.9 29.8 1.0 C A:PRO65 5.0 17.3 1.0

A.Henriksen, T.P.King, O.Mirza, R.I.Monsalve, K.Meno, H.Ipsen, J.N.Larsen, M.Gajhede, M.D.Spangfort. Major Venom Allergen of Yellow Jackets, Ves V 5: Structural Characterization of A Pathogenesis-Related Protein Superfamily. Proteins: Struct.,Funct., V. 45 438 2001GENET..
ISSN: ISSN 0887-3585
PubMed: 11746691
DOI: 10.1002/PROT.1160