Sodium in PDB 1qjd: Flavocytochrome C3 From Shewanella Frigidimarina

The structure of Flavocytochrome C3 From Shewanella Frigidimarina, PDB code: 1qjd was solved by P.Taylor, S.L.Pealing, G.A.Reid, S.K.Chapman, M.D.Walkinshaw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.393, 91.946, 78.288, 90.00, 91.09, 90.00
R / Rfree (%)	19.2 / 26.7

The structure of Flavocytochrome C3 From Shewanella Frigidimarina also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Sodium atom in the Flavocytochrome C3 From Shewanella Frigidimarina (pdb code 1qjd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Flavocytochrome C3 From Shewanella Frigidimarina, PDB code: 1qjd:

Sodium binding site 1 out of 1 in the Flavocytochrome C3 From Shewanella Frigidimarina


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Flavocytochrome C3 From Shewanella Frigidimarina within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1575 b:13.1 occ:1.00 O A:THR536 2.4 9.5 1.0 O A:HOH2523 2.4 11.9 1.0 O A:GLY508 2.4 9.6 1.0 O A:GLU534 2.4 6.8 1.0 O A:THR506 2.4 14.9 1.0 O A:MET507 3.1 10.5 1.0 C A:MET507 3.2 15.4 1.0 C A:GLY508 3.3 11.6 1.0 C A:GLU534 3.4 9.0 1.0 O A:HOH2524 3.4 15.3 1.0 C A:THR536 3.5 19.6 1.0 C A:THR506 3.6 8.9 1.0 N A:GLY508 3.6 13.0 1.0 CA A:MET507 3.7 8.2 1.0 CA A:GLU534 4.0 9.0 1.0 O A:HOH2548 4.0 17.4 1.0 CG A:GLU534 4.0 7.2 1.0 CA A:GLY508 4.1 10.9 1.0 N A:THR536 4.1 6.8 1.0 N A:MET507 4.1 11.3 1.0 C A:VAL535 4.3 13.7 1.0 N A:GLY509 4.3 15.1 1.0 O A:HOH2542 4.3 12.5 1.0 N A:GLY537 4.4 15.8 1.0 CA A:THR536 4.4 9.3 1.0 N A:VAL535 4.5 13.2 1.0 CA A:GLY509 4.5 10.0 1.0 CA A:GLY537 4.5 13.5 1.0 O A:VAL535 4.6 16.7 1.0 CB A:GLU534 4.6 13.5 1.0 OG1 A:THR506 4.6 16.3 1.0 NE2 A:HIS505 4.7 11.4 1.0 CA A:VAL535 4.7 10.8 1.0 CA A:THR506 4.8 8.9 1.0 O A:GLY533 4.8 10.4 1.0

P.Taylor, S.L.Pealing, G.A.Reid, S.K.Chapman, M.D.Walkinshaw. Structural and Mechanistic Mapping of A Unique Fumarate Reductase Nat.Struct.Biol. V. 6 1108 1999.
ISSN: ISSN 1072-8368
PubMed: 10581550
DOI: 10.1038/70045