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Sodium in PDB 1qio: Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme

Enzymatic activity of Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme

All present enzymatic activity of Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme, PDB code: 1qio was solved by G.Kryger, M.Weik, R.B.Ravelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.929, 76.929, 37.207, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 18.8

Other elements in 1qio:

The structure of Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme (pdb code 1qio). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme, PDB code: 1qio:

Sodium binding site 1 out of 1 in 1qio

Go back to Sodium Binding Sites List in 1qio
Sodium binding site 1 out of 1 in the Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Specific Chemical and Structural Damage Caused By Intense Synchrotron Radiation to Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na130

b:14.8
occ:1.00
 O A:HOH1053 2.2 15.8 1.0
O A:SER60 2.3 14.5 1.0
O A:ARG73 2.4 17.9 1.0
O A:HOH1020 2.4 11.2 1.0
OG A:SER72 2.4 16.6 1.0
O A:CYS64 2.5 10.1 1.0
CB A:SER72 3.2 20.9 1.0
C A:ARG73 3.4 15.8 1.0
C A:SER60 3.5 10.4 1.0
C A:CYS64 3.5 9.2 1.0
CA A:ASN65 3.9 8.9 1.0
N A:ARG73 3.9 19.4 1.0
CA A:SER60 4.1 9.8 1.0
C A:SER72 4.1 21.5 1.0
N A:ASN65 4.2 8.2 1.0
CB A:SER60 4.3 9.0 1.0
CA A:ARG73 4.3 18.4 1.0
CA A:SER72 4.3 19.9 1.0
N A:ASN74 4.3 14.4 1.0
C A:ARG61 4.4 15.0 1.0
O A:ARG61 4.4 16.9 1.0
N A:ARG61 4.5 12.5 1.0
OD1 A:ASN65 4.5 13.1 1.0
N A:CYS64 4.5 9.2 1.0
N A:ASP66 4.6 8.4 1.0
CA A:ASN74 4.6 12.1 1.0
O A:HOH1001 4.6 6.8 1.0
CB A:THR69 4.6 11.6 1.0
CA A:ARG61 4.7 14.3 1.0
O A:HOH1170 4.7 38.3 1.0
O A:SER72 4.7 22.3 1.0
CA A:CYS64 4.7 9.9 1.0
CB A:ASN74 4.8 11.6 1.0
C A:ASN65 4.8 7.6 1.0
CB A:ASN65 4.8 10.4 1.0
N A:TRP62 4.9 11.4 1.0
O A:THR69 5.0 15.3 1.0

Reference:

M.Weik, R.B.Ravelli, G.Kryger, S.Mcsweeney, M.L.Raves, M.Harel, P.Gros, I.Silman, J.Kroon, J.L.Sussman. Specific Chemical and Structural Damage to Proteins Produced By Synchrotron Radiation. Proc.Natl.Acad.Sci.Usa V. 97 623 2000.
ISSN: ISSN 0027-8424
PubMed: 10639129
DOI: 10.1073/PNAS.97.2.623
Page generated: Sun Oct 6 21:29:24 2024

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