Sodium in PDB 1q93: Crystal Structure of A Mutant of the Sarcin/Ricin Domain From Rat 28S Rrna

The structure of Crystal Structure of A Mutant of the Sarcin/Ricin Domain From Rat 28S Rrna, PDB code: 1q93 was solved by C.C.Correll, J.Beneken, M.J.Plantinga, M.Lubbers, Y.L.Chan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.25
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	42.143, 42.143, 336.167, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 26.6

The binding sites of Sodium atom in the Crystal Structure of A Mutant of the Sarcin/Ricin Domain From Rat 28S Rrna (pdb code 1q93). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Mutant of the Sarcin/Ricin Domain From Rat 28S Rrna, PDB code: 1q93:

Sodium binding site 1 out of 1 in the Crystal Structure of A Mutant of the Sarcin/Ricin Domain From Rat 28S Rrna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Mutant of the Sarcin/Ricin Domain From Rat 28S Rrna within 5.0Å range: probe atom residue distance (Å) B Occ C:Na100 b:44.4 occ:1.00 N6 C:A17 1.9 39.8 1.0 OP1 B:G5 2.4 38.2 1.0 N3 C:G14 3.2 29.4 1.0 C6 C:A17 3.2 38.8 1.0 C1' C:G14 3.2 28.3 1.0 O2' C:G14 3.5 27.6 1.0 N2 C:G13 3.5 32.7 1.0 P B:G5 3.6 36.7 1.0 O2 C:C18 3.6 28.4 1.0 O3' B:U4 3.6 35.8 1.0 N7 C:G16 3.8 28.9 1.0 C2' C:G14 3.9 28.0 1.0 C4 C:G14 3.9 29.7 1.0 N9 C:G14 3.9 29.5 1.0 C5 C:A17 3.9 37.8 1.0 N7 C:A17 4.0 37.0 1.0 O4' C:G14 4.1 28.0 1.0 C2 C:G14 4.2 30.1 1.0 O6 C:G16 4.2 29.5 1.0 C2 C:G13 4.2 30.6 1.0 N1 C:A17 4.2 39.5 1.0 N2 C:G14 4.3 31.1 1.0 C5 C:G16 4.4 30.9 1.0 C2 C:C18 4.4 29.7 1.0 C6 C:G16 4.5 30.4 1.0 OP2 B:G5 4.5 36.5 1.0 N1 C:G13 4.6 26.5 1.0 C8 C:G16 4.6 29.9 1.0 O5' B:G5 4.7 34.6 1.0 C5' B:G5 4.8 31.8 1.0 N3 C:C18 4.8 29.4 1.0 N3 C:G13 4.9 31.3 1.0 C4' C:G14 5.0 28.4 1.0 C3' B:U4 5.0 36.9 1.0

C.C.Correll, J.Beneken, M.J.Plantinga, M.Lubbers, Y.L.Chan. The Common and Distinctive Features of the Bulged-G Motif Based on A 1.04 A Resolution Rna Structure Nucleic Acids Res. V. 31 6806 2003.
ISSN: ISSN 0305-1048
PubMed: 14627814
DOI: 10.1093/NAR/GKG908