Sodium in PDB 1pyf: Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Apo)

The structure of Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Apo), PDB code: 1pyf was solved by A.H.Ehrensberger, D.K.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.277, 88.101, 94.566, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 22.2

The binding sites of Sodium atom in the Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Apo) (pdb code 1pyf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Apo), PDB code: 1pyf:

Sodium binding site 1 out of 1 in the Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Apo)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Nadph-Dependent Family 11 Aldo-Keto Reductase AKR11A(Apo) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na315 b:19.5 occ:1.00 O A:ILE273 2.3 20.9 1.0 O A:LEU268 2.4 18.0 1.0 O A:ARG270 2.4 18.6 1.0 O A:HOH396 2.4 25.4 1.0 O A:HOH400 2.4 24.0 1.0 O A:HOH343 2.5 21.8 1.0 C A:ARG270 3.5 19.7 1.0 C A:ILE273 3.5 19.9 1.0 C A:LEU268 3.5 18.9 1.0 C A:ALA269 4.1 20.9 1.0 N A:ARG270 4.1 19.9 1.0 N A:ILE273 4.2 18.9 1.0 CA A:PRO271 4.2 21.3 1.0 C A:PRO271 4.3 20.4 1.0 O A:PRO271 4.3 22.6 1.0 N A:PRO271 4.3 19.3 1.0 CA A:ILE273 4.3 18.2 1.0 O A:ALA269 4.4 22.7 1.0 CA A:LEU268 4.4 17.5 1.0 CA A:ARG270 4.4 20.0 1.0 N A:ASP274 4.4 18.4 1.0 N A:ALA269 4.4 19.6 1.0 CA A:ALA269 4.5 20.1 1.0 CA A:ASP274 4.6 18.2 1.0 O A:HOH404 4.7 28.4 1.0 OD1 A:ASP274 4.7 23.2 1.0 O A:HOH410 4.8 34.2 1.0 CB A:ILE273 4.8 18.4 1.0 N A:GLU272 4.9 19.9 1.0 O A:TYR267 4.9 14.5 1.0

A.H.Ehrensberger, D.K.Wilson. Structural and Catalytic Diversity in the Two Family 11 Aldo-Keto Reductases J.Mol.Biol. V. 337 661 2004.
ISSN: ISSN 0022-2836
PubMed: 15019785
DOI: 10.1016/J.JMB.2004.01.059