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Sodium in PDB 1po8: Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution.

Enzymatic activity of Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution.

All present enzymatic activity of Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution.:
3.1.1.4;

Protein crystallography data

The structure of Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution., PDB code: 1po8 was solved by G.Singh, J.Jayasankar, S.Sharma, P.Kaur, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.26 / 2.71
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.790, 53.790, 82.500, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 23.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution. (pdb code 1po8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution., PDB code: 1po8:

Sodium binding site 1 out of 1 in 1po8

Go back to Sodium Binding Sites List in 1po8
Sodium binding site 1 out of 1 in the Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na121

b:33.9
occ:1.00
 OD2 A:ASP49 2.5 26.2 1.0
O A:GLY32 2.6 36.9 1.0
O A:TYR28 2.7 32.2 1.0
O A:GLY30 2.7 38.3 1.0
OD1 A:ASP49 2.8 24.9 1.0
C A:GLY32 2.9 37.4 1.0
CG A:ASP49 3.0 24.4 1.0
N A:GLY32 3.2 38.0 1.0
O A:HOH160 3.3 37.8 1.0
CA A:GLY32 3.4 37.8 1.0
N A:GLY33 3.6 37.8 1.0
C A:LYS31 3.7 38.2 1.0
C A:TYR28 3.7 31.1 1.0
C A:GLY30 3.8 37.9 1.0
CA A:GLY33 4.1 37.9 1.0
CA A:TYR28 4.2 30.3 1.0
O A:LYS31 4.3 36.8 1.0
NH2 A:ARG114 4.3 67.3 1.0
CA A:LYS31 4.4 38.9 1.0
N A:GLY30 4.4 33.8 1.0
CB A:ASP49 4.5 22.7 1.0
CD2 A:TYR28 4.5 29.6 1.0
CB A:TYR28 4.5 30.4 1.0
N A:LYS31 4.5 39.0 1.0
CA A:GLY30 4.8 36.0 1.0
N A:CYS29 4.9 30.5 1.0
O A:HOH169 4.9 65.3 1.0
O A:CYS45 4.9 24.6 1.0
C A:CYS29 5.0 33.2 1.0
CG A:TYR28 5.0 29.4 1.0

Reference:

G.Singh, J.Jayasankar, S.Sharma, P.Kaur, T.P.Singh. Crystal Structure of A Complex Formed Between Krait Venom Phospholipase A2 and Heptanoic Acid at 2.7 A Resolution. To Be Published.
Page generated: Sun Oct 6 21:19:01 2024

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