Sodium in the structure of Crystal Structure Of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex With Acetate (pdb 1pj5)

The binding sites of Sodium atom in the structure of Crystal Structure Of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex With Acetate (pdb code 1pj5). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1pj5 structure was solved by D.LEYS, J.BASRAN, N.S.SCRUTTON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 15.0-1.6 Space group C222 a (A) 71.381 b (A) 226.680 c (A) 120.661 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 16 Rfree (%) 19.8 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1pj5 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1pj5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp257, A: Tyr272, A: Phe411, A: Val412, A: Glu413, A: Ile414, A: Asp416, A: Hoh2147, A: Hoh2152, A: Hoh2198, A: Hoh2215, A: Hoh2237, A: Hoh2351, A: Hoh2475, A: Hoh2494, A: Hoh2639, A: Hoh3092, conact list: Atom Atom Distance (A) Na CB A:Asp257 4.39 Na OD2 A:Asp257 2.06 Na OD1 A:Asp257 3.30 Na CG A:Asp257 3.04 Na O A:Tyr272 4.13 Na O A:Phe411 4.21 Na O A:Val412 2.11 Na CB A:Val412 4.85 Na C A:Val412 3.21 Na CG1 A:Val412 4.42 Na CA A:Val412 3.93 Na N A:Glu413 4.24 Na C A:Glu413 4.81 Na CA A:Glu413 4.54 Na N A:Ile414 4.64 Na CG2 A:Ile414 4.93 Na OD1 A:Asp416 3.91 Na CG A:Asp416 4.85 Na O A:Hoh2147 2.18 Na O A:Hoh2152 2.10 Na O A:Hoh2198 2.05 Na O A:Hoh2215 4.28 Na O A:Hoh2237 2.09 Na O A:Hoh2351 4.98 Na O A:Hoh2475 4.19 Na O A:Hoh2494 4.06 Na O A:Hoh2639 4.47 Na O A:Hoh3092 4.12 interactive model: