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Sodium in PDB 1ph6: Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg

Protein crystallography data

The structure of Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg, PDB code: 1ph6 was solved by D.L.Theobald, S.C.Schultz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.90 / 2.10
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.465, 93.465, 423.944, 90.00, 90.00, 120.00
R / Rfree (%) 24.2 / 27.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg (pdb code 1ph6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg, PDB code: 1ph6:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in 1ph6

Go back to Sodium Binding Sites List in 1ph6
Sodium binding site 1 out of 5 in the Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg within 5.0Å range:

Sodium binding site 2 out of 5 in 1ph6

Go back to Sodium Binding Sites List in 1ph6
Sodium binding site 2 out of 5 in the Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na497

b:0.3
occ:1.00
NA A:NA499 4.1 85.7 1.0

Sodium binding site 3 out of 5 in 1ph6

Go back to Sodium Binding Sites List in 1ph6
Sodium binding site 3 out of 5 in the Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na498

b:94.4
occ:1.00
NA A:NA500 4.7 85.2 1.0

Sodium binding site 4 out of 5 in 1ph6

Go back to Sodium Binding Sites List in 1ph6
Sodium binding site 4 out of 5 in the Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na499

b:85.7
occ:1.00
NA A:NA497 4.1 0.3 1.0

Sodium binding site 5 out of 5 in 1ph6

Go back to Sodium Binding Sites List in 1ph6
Sodium binding site 5 out of 5 in the Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Crystal Structure of the Oxytricha Nova Telomere End- Binding Protein Complexed with Noncognate Ssdna Ggggttttgtgg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na500

b:85.2
occ:1.00
NA A:NA498 4.7 94.4 1.0

Reference:

D.L.Theobald, S.C.Schultz. Nucleotide Shuffling and Ssdna Recognition in Oxytricha Nova Telomere End-Binding Protein Complexes Embo J. V. 22 4314 2003.
ISSN: ISSN 0261-4189
PubMed: 12912928
DOI: 10.1093/EMBOJ/CDG415
Page generated: Sun Oct 6 21:16:14 2024

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