Sodium in PDB 1p0z: Sensor Kinase Cita Binding Domain
Enzymatic activity of Sensor Kinase Cita Binding Domain
All present enzymatic activity of Sensor Kinase Cita Binding Domain:
2.7.13.3;
Protein crystallography data
The structure of Sensor Kinase Cita Binding Domain, PDB code: 1p0z
was solved by
S.Reinelt,
E.Hofmann,
T.Gerharz,
M.Bott,
D.R.Madden,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
38.03 /
1.60
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
61.613,
84.333,
97.710,
112.83,
107.36,
93.74
|
|
R / Rfree (%)
|
16.8 /
19
|
Other elements in 1p0z:
The structure of Sensor Kinase Cita Binding Domain also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the Sensor Kinase Cita Binding Domain
(pdb code 1p0z). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 10 binding sites of Sodium where determined in the
Sensor Kinase Cita Binding Domain, PDB code: 1p0z:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Sodium binding site 1 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 1 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na1633
b:19.1
occ:1.00
|
O
|
A:HOH1650
|
2.4
|
20.2
|
1.0
|
|
O
|
A:PRO111
|
2.4
|
18.2
|
1.0
|
|
OG
|
A:SER24
|
2.4
|
17.9
|
1.0
|
|
OG
|
A:SER110
|
2.4
|
16.7
|
1.0
|
|
O
|
A:HOH1641
|
2.5
|
24.9
|
1.0
|
|
O
|
A:HOH1656
|
2.5
|
23.0
|
1.0
|
|
CB
|
A:SER24
|
3.5
|
18.4
|
1.0
|
|
CB
|
A:SER110
|
3.6
|
17.4
|
1.0
|
|
C
|
A:PRO111
|
3.6
|
18.1
|
1.0
|
|
N
|
A:PRO111
|
3.8
|
16.9
|
1.0
|
|
CD
|
A:PRO111
|
3.9
|
18.2
|
1.0
|
|
C
|
A:SER110
|
4.0
|
17.5
|
1.0
|
|
CG
|
A:PRO111
|
4.1
|
19.4
|
1.0
|
|
CA
|
A:PRO111
|
4.3
|
18.1
|
1.0
|
|
O
|
A:MET21
|
4.3
|
20.2
|
1.0
|
|
CA
|
A:SER110
|
4.3
|
16.2
|
1.0
|
|
O
|
A:HOH1719
|
4.3
|
48.4
|
1.0
|
|
OG
|
A:SER93
|
4.4
|
19.1
|
1.0
|
|
OE1
|
A:GLN113
|
4.4
|
25.7
|
1.0
|
|
O
|
A:HOH1647
|
4.4
|
22.8
|
1.0
|
|
C
|
A:SER24
|
4.5
|
20.4
|
1.0
|
|
CA
|
A:MET21
|
4.6
|
18.1
|
1.0
|
|
O
|
A:SER110
|
4.6
|
17.8
|
1.0
|
|
CA
|
A:SER24
|
4.6
|
18.9
|
1.0
|
|
N
|
A:ILE112
|
4.6
|
18.1
|
0.7
|
|
N
|
A:ILE112
|
4.7
|
18.8
|
0.3
|
|
N
|
A:ALA25
|
4.7
|
19.6
|
1.0
|
|
O
|
A:SER24
|
4.8
|
20.3
|
1.0
|
|
CB
|
A:PRO111
|
4.8
|
18.6
|
1.0
|
|
CA
|
A:ILE112
|
4.9
|
18.1
|
0.7
|
|
C
|
A:MET21
|
4.9
|
18.6
|
1.0
|
|
O
|
A:ALA20
|
5.0
|
18.1
|
1.0
|
|
CA
|
A:ILE112
|
5.0
|
19.0
|
0.3
|
|
O
|
A:HOH1651
|
5.0
|
23.4
|
1.0
|
|
Sodium binding site 2 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 2 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na1637
b:18.9
occ:1.00
|
O
|
B:PRO111
|
2.4
|
17.8
|
1.0
|
|
OG
|
B:SER110
|
2.4
|
17.3
|
1.0
|
|
O
|
B:HOH1656
|
2.5
|
23.5
|
1.0
|
|
OG
|
B:SER24
|
2.5
|
19.1
|
1.0
|
|
O
|
B:HOH1655
|
2.5
|
22.9
|
1.0
|
|
O
|
B:HOH1653
|
2.5
|
24.8
|
1.0
|
|
CB
|
B:SER24
|
3.5
|
18.9
|
1.0
|
|
C
|
B:PRO111
|
3.6
|
18.7
|
1.0
|
|
CB
|
B:SER110
|
3.6
|
17.5
|
1.0
|
|
N
|
B:PRO111
|
3.8
|
17.0
|
1.0
|
|
CD
|
B:PRO111
|
3.9
|
18.2
|
1.0
|
|
C
|
B:SER110
|
4.1
|
17.0
|
1.0
|
|
CG
|
B:PRO111
|
4.1
|
20.3
|
1.0
|
|
O
|
B:HOH1720
|
4.2
|
41.4
|
1.0
|
|
O
|
B:HOH1759
|
4.2
|
47.5
|
1.0
|
|
CA
|
B:PRO111
|
4.3
|
18.2
|
1.0
|
|
O
|
B:MET21
|
4.3
|
19.3
|
0.5
|
|
CA
|
B:SER110
|
4.3
|
16.8
|
1.0
|
|
O
|
B:MET21
|
4.4
|
18.9
|
0.5
|
|
OE1
|
B:GLN113
|
4.4
|
30.3
|
1.0
|
|
OG
|
B:SER93
|
4.5
|
16.8
|
1.0
|
|
O
|
B:HOH1647
|
4.5
|
20.8
|
1.0
|
|
C
|
B:SER24
|
4.5
|
21.1
|
1.0
|
|
O
|
B:SER110
|
4.6
|
16.0
|
1.0
|
|
CA
|
B:MET21
|
4.6
|
19.0
|
0.5
|
|
CA
|
B:MET21
|
4.6
|
18.6
|
0.5
|
|
CA
|
B:SER24
|
4.6
|
19.1
|
1.0
|
|
N
|
B:ILE112
|
4.6
|
18.5
|
1.0
|
|
N
|
B:ALA25
|
4.7
|
22.0
|
1.0
|
|
O
|
B:SER24
|
4.8
|
21.9
|
1.0
|
|
CB
|
B:PRO111
|
4.8
|
18.6
|
1.0
|
|
CA
|
B:ILE112
|
4.9
|
18.6
|
1.0
|
|
C
|
B:MET21
|
5.0
|
19.6
|
0.5
|
|
C
|
B:MET21
|
5.0
|
19.8
|
0.5
|
|
Sodium binding site 3 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 3 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na1641
b:17.7
occ:1.00
|
O
|
C:HOH1657
|
2.3
|
23.8
|
1.0
|
|
O
|
C:HOH1765
|
2.4
|
23.0
|
1.0
|
|
O
|
C:PRO111
|
2.4
|
17.5
|
1.0
|
|
OG
|
C:SER110
|
2.4
|
17.5
|
1.0
|
|
O
|
C:HOH1649
|
2.4
|
21.3
|
1.0
|
|
OG
|
C:SER24
|
2.5
|
18.5
|
1.0
|
|
CB
|
C:SER24
|
3.5
|
16.6
|
1.0
|
|
C
|
C:PRO111
|
3.6
|
17.3
|
1.0
|
|
CB
|
C:SER110
|
3.6
|
18.0
|
1.0
|
|
N
|
C:PRO111
|
3.8
|
16.8
|
1.0
|
|
CD
|
C:PRO111
|
3.9
|
16.4
|
1.0
|
|
O
|
C:HOH1813
|
3.9
|
47.8
|
1.0
|
|
C
|
C:SER110
|
4.1
|
16.9
|
1.0
|
|
CG
|
C:PRO111
|
4.1
|
17.1
|
1.0
|
|
OE1
|
C:GLN113
|
4.3
|
24.0
|
1.0
|
|
CA
|
C:PRO111
|
4.3
|
17.5
|
1.0
|
|
O
|
C:MET21
|
4.3
|
19.0
|
0.5
|
|
CA
|
C:SER110
|
4.4
|
15.3
|
1.0
|
|
O
|
C:MET21
|
4.4
|
19.0
|
0.5
|
|
OG
|
C:SER93
|
4.5
|
19.4
|
1.0
|
|
O
|
C:HOH1720
|
4.5
|
47.3
|
1.0
|
|
O
|
C:HOH1663
|
4.5
|
20.1
|
1.0
|
|
C
|
C:SER24
|
4.6
|
19.9
|
1.0
|
|
CA
|
C:MET21
|
4.6
|
18.5
|
0.5
|
|
O
|
C:SER110
|
4.6
|
17.1
|
1.0
|
|
CA
|
C:MET21
|
4.6
|
19.0
|
0.5
|
|
CA
|
C:SER24
|
4.6
|
18.6
|
1.0
|
|
N
|
C:ILE112
|
4.7
|
15.9
|
1.0
|
|
N
|
C:ALA25
|
4.8
|
19.8
|
1.0
|
|
O
|
C:SER24
|
4.8
|
20.8
|
1.0
|
|
CB
|
C:PRO111
|
4.9
|
17.1
|
1.0
|
|
CA
|
C:ILE112
|
4.9
|
17.2
|
1.0
|
|
O
|
C:HOH1648
|
5.0
|
21.1
|
1.0
|
|
C
|
C:MET21
|
5.0
|
19.4
|
0.5
|
|
C
|
C:MET21
|
5.0
|
18.9
|
0.5
|
|
Sodium binding site 4 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 4 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na1645
b:17.7
occ:1.00
|
O
|
D:HOH1651
|
2.4
|
20.1
|
1.0
|
|
O
|
D:PRO111
|
2.4
|
17.7
|
1.0
|
|
OG
|
D:SER110
|
2.5
|
15.7
|
1.0
|
|
OG
|
D:SER24
|
2.5
|
17.2
|
1.0
|
|
O
|
D:HOH1649
|
2.5
|
21.8
|
1.0
|
|
O
|
D:HOH1666
|
2.5
|
23.7
|
1.0
|
|
CB
|
D:SER24
|
3.5
|
17.1
|
1.0
|
|
C
|
D:PRO111
|
3.6
|
16.9
|
1.0
|
|
CB
|
D:SER110
|
3.6
|
16.6
|
1.0
|
|
N
|
D:PRO111
|
3.8
|
15.5
|
1.0
|
|
CD
|
D:PRO111
|
3.9
|
16.8
|
1.0
|
|
C
|
D:SER110
|
4.1
|
16.4
|
1.0
|
|
CG
|
D:PRO111
|
4.1
|
18.5
|
1.0
|
|
O
|
D:HOH1699
|
4.2
|
39.8
|
1.0
|
|
CA
|
D:PRO111
|
4.3
|
16.5
|
1.0
|
|
CA
|
D:SER110
|
4.3
|
15.2
|
1.0
|
|
OE1
|
D:GLN113
|
4.3
|
24.3
|
1.0
|
|
O
|
D:MET21
|
4.4
|
19.8
|
1.0
|
|
OG
|
D:SER93
|
4.5
|
18.4
|
1.0
|
|
O
|
D:HOH1663
|
4.5
|
20.6
|
1.0
|
|
C
|
D:SER24
|
4.5
|
20.1
|
1.0
|
|
CA
|
D:MET21
|
4.6
|
17.0
|
1.0
|
|
O
|
D:SER110
|
4.6
|
16.6
|
1.0
|
|
CA
|
D:SER24
|
4.6
|
18.7
|
1.0
|
|
N
|
D:ILE112
|
4.7
|
16.5
|
1.0
|
|
O
|
D:SER24
|
4.8
|
21.4
|
1.0
|
|
CB
|
D:PRO111
|
4.8
|
17.0
|
1.0
|
|
N
|
D:ALA25
|
4.8
|
20.3
|
1.0
|
|
O
|
D:HOH1758
|
4.9
|
43.7
|
1.0
|
|
O
|
D:HOH1656
|
4.9
|
22.7
|
1.0
|
|
C
|
D:MET21
|
5.0
|
18.5
|
1.0
|
|
CA
|
D:ILE112
|
5.0
|
17.3
|
1.0
|
|
Sodium binding site 5 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 5 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Na1649
b:21.6
occ:1.00
|
O
|
E:PRO111
|
2.4
|
19.3
|
1.0
|
|
OG
|
E:SER110
|
2.4
|
19.0
|
1.0
|
|
O
|
E:HOH1659
|
2.4
|
24.9
|
1.0
|
|
O
|
E:HOH1670
|
2.4
|
23.9
|
1.0
|
|
OG
|
E:SER24
|
2.5
|
20.1
|
1.0
|
|
O
|
E:HOH1693
|
2.5
|
30.3
|
1.0
|
|
CB
|
E:SER24
|
3.5
|
18.8
|
1.0
|
|
C
|
E:PRO111
|
3.6
|
19.7
|
1.0
|
|
CB
|
E:SER110
|
3.6
|
18.3
|
1.0
|
|
N
|
E:PRO111
|
3.8
|
19.3
|
1.0
|
|
CD
|
E:PRO111
|
3.8
|
19.7
|
1.0
|
|
C
|
E:SER110
|
4.0
|
17.2
|
1.0
|
|
CG
|
E:PRO111
|
4.0
|
20.9
|
1.0
|
|
CA
|
E:PRO111
|
4.3
|
19.4
|
1.0
|
|
CA
|
E:SER110
|
4.3
|
18.7
|
1.0
|
|
O
|
E:MET21
|
4.4
|
20.9
|
1.0
|
|
OG
|
E:SER93
|
4.4
|
20.8
|
1.0
|
|
O
|
E:HOH1660
|
4.5
|
24.1
|
1.0
|
|
O
|
E:SER110
|
4.5
|
18.1
|
1.0
|
|
C
|
E:SER24
|
4.5
|
21.6
|
1.0
|
|
CA
|
E:MET21
|
4.6
|
20.9
|
1.0
|
|
CA
|
E:SER24
|
4.7
|
20.6
|
1.0
|
|
N
|
E:ILE112
|
4.7
|
20.3
|
1.0
|
|
O
|
E:SER24
|
4.8
|
22.1
|
1.0
|
|
OE1
|
E:GLN113
|
4.8
|
33.1
|
1.0
|
|
N
|
E:ALA25
|
4.8
|
22.3
|
1.0
|
|
CB
|
E:PRO111
|
4.8
|
20.6
|
1.0
|
|
CA
|
E:ILE112
|
4.9
|
20.8
|
1.0
|
|
C
|
E:MET21
|
5.0
|
21.8
|
1.0
|
|
O
|
E:ALA20
|
5.0
|
20.5
|
1.0
|
|
Sodium binding site 6 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 6 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Na1653
b:19.2
occ:1.00
|
O
|
F:HOH1659
|
2.3
|
19.1
|
1.0
|
|
OG
|
F:SER110
|
2.4
|
16.8
|
1.0
|
|
O
|
F:PRO111
|
2.4
|
17.4
|
1.0
|
|
OG
|
F:SER24
|
2.5
|
17.9
|
1.0
|
|
O
|
F:HOH1672
|
2.5
|
24.9
|
1.0
|
|
O
|
F:HOH1663
|
2.5
|
21.6
|
1.0
|
|
CB
|
F:SER24
|
3.5
|
16.8
|
1.0
|
|
C
|
F:PRO111
|
3.6
|
16.7
|
1.0
|
|
CB
|
F:SER110
|
3.6
|
16.4
|
1.0
|
|
N
|
F:PRO111
|
3.8
|
17.0
|
1.0
|
|
CD
|
F:PRO111
|
3.8
|
18.1
|
1.0
|
|
C
|
F:SER110
|
4.1
|
16.8
|
1.0
|
|
CG
|
F:PRO111
|
4.1
|
17.7
|
1.0
|
|
O
|
F:HOH1758
|
4.2
|
42.7
|
1.0
|
|
CA
|
F:PRO111
|
4.3
|
16.9
|
1.0
|
|
O
|
F:MET21
|
4.4
|
19.0
|
0.5
|
|
CA
|
F:SER110
|
4.4
|
16.4
|
1.0
|
|
OE1
|
F:GLN113
|
4.4
|
23.9
|
1.0
|
|
O
|
F:MET21
|
4.4
|
19.6
|
0.5
|
|
OG
|
F:SER93
|
4.4
|
17.4
|
1.0
|
|
O
|
F:HOH1674
|
4.5
|
20.4
|
1.0
|
|
C
|
F:SER24
|
4.5
|
19.7
|
1.0
|
|
CA
|
F:MET21
|
4.6
|
19.4
|
0.5
|
|
CA
|
F:MET21
|
4.6
|
19.0
|
0.5
|
|
O
|
F:SER110
|
4.6
|
16.1
|
1.0
|
|
CA
|
F:SER24
|
4.7
|
17.6
|
1.0
|
|
N
|
F:ILE112
|
4.7
|
17.2
|
1.0
|
|
N
|
F:ALA25
|
4.8
|
19.9
|
1.0
|
|
O
|
F:SER24
|
4.8
|
21.3
|
1.0
|
|
CB
|
F:PRO111
|
4.8
|
17.4
|
1.0
|
|
O
|
F:HOH1661
|
4.9
|
21.5
|
1.0
|
|
C
|
F:MET21
|
5.0
|
19.6
|
0.5
|
|
C
|
F:MET21
|
5.0
|
19.7
|
0.5
|
|
CA
|
F:ILE112
|
5.0
|
16.7
|
1.0
|
|
Sodium binding site 7 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 7 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Na1657
b:23.1
occ:1.00
|
O
|
G:PRO111
|
2.4
|
20.6
|
1.0
|
|
OG
|
G:SER110
|
2.4
|
19.3
|
1.0
|
|
O
|
G:HOH1666
|
2.4
|
25.0
|
1.0
|
|
O
|
G:HOH1659
|
2.4
|
25.8
|
1.0
|
|
OG
|
G:SER24
|
2.4
|
20.5
|
1.0
|
|
O
|
G:HOH1676
|
2.5
|
24.5
|
1.0
|
|
CB
|
G:SER24
|
3.5
|
22.2
|
1.0
|
|
CB
|
G:SER110
|
3.5
|
19.3
|
1.0
|
|
C
|
G:PRO111
|
3.6
|
21.6
|
1.0
|
|
N
|
G:PRO111
|
3.8
|
20.9
|
1.0
|
|
CD
|
G:PRO111
|
3.8
|
21.4
|
1.0
|
|
C
|
G:SER110
|
4.0
|
21.2
|
1.0
|
|
CG
|
G:PRO111
|
4.1
|
20.6
|
1.0
|
|
O
|
G:HOH1709
|
4.1
|
46.0
|
1.0
|
|
CA
|
G:PRO111
|
4.2
|
20.6
|
1.0
|
|
O
|
G:MET21
|
4.3
|
23.8
|
1.0
|
|
OE1
|
G:GLN113
|
4.3
|
28.9
|
1.0
|
|
CA
|
G:SER110
|
4.3
|
20.0
|
1.0
|
|
O
|
G:HOH1669
|
4.4
|
25.8
|
1.0
|
|
OG
|
G:SER93
|
4.5
|
19.8
|
1.0
|
|
C
|
G:SER24
|
4.5
|
24.2
|
1.0
|
|
CA
|
G:MET21
|
4.6
|
23.9
|
1.0
|
|
CA
|
G:SER24
|
4.6
|
22.9
|
1.0
|
|
O
|
G:SER110
|
4.6
|
21.6
|
1.0
|
|
N
|
G:ILE112
|
4.7
|
22.3
|
1.0
|
|
N
|
G:ALA25
|
4.7
|
24.4
|
1.0
|
|
O
|
G:SER24
|
4.8
|
25.3
|
1.0
|
|
CB
|
G:PRO111
|
4.8
|
21.1
|
1.0
|
|
O
|
G:HOH1667
|
4.9
|
24.8
|
1.0
|
|
C
|
G:MET21
|
4.9
|
24.5
|
1.0
|
|
CA
|
G:ILE112
|
5.0
|
23.1
|
1.0
|
|
Sodium binding site 8 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 8 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Na1661
b:23.6
occ:1.00
|
O
|
H:PRO111
|
2.4
|
22.7
|
1.0
|
|
O
|
H:HOH1674
|
2.4
|
26.6
|
1.0
|
|
O
|
H:HOH1679
|
2.4
|
27.1
|
1.0
|
|
OG
|
H:SER110
|
2.5
|
22.5
|
1.0
|
|
OG
|
H:SER24
|
2.5
|
24.1
|
1.0
|
|
O
|
H:HOH1685
|
2.6
|
27.5
|
1.0
|
|
CB
|
H:SER24
|
3.5
|
24.2
|
1.0
|
|
C
|
H:PRO111
|
3.6
|
22.6
|
1.0
|
|
CB
|
H:SER110
|
3.6
|
22.1
|
1.0
|
|
N
|
H:PRO111
|
3.8
|
21.5
|
1.0
|
|
CD
|
H:PRO111
|
3.8
|
22.1
|
1.0
|
|
CG
|
H:PRO111
|
4.0
|
21.7
|
1.0
|
|
C
|
H:SER110
|
4.1
|
23.0
|
1.0
|
|
CA
|
H:PRO111
|
4.2
|
22.4
|
1.0
|
|
O
|
H:HOH1731
|
4.3
|
48.0
|
1.0
|
|
CA
|
H:SER110
|
4.4
|
21.4
|
1.0
|
|
O
|
H:MET21
|
4.4
|
25.4
|
1.0
|
|
OE1
|
H:GLN113
|
4.4
|
32.8
|
1.0
|
|
O
|
H:HOH1688
|
4.4
|
29.9
|
1.0
|
|
OG
|
H:SER93
|
4.5
|
21.1
|
1.0
|
|
C
|
H:SER24
|
4.5
|
26.2
|
1.0
|
|
CA
|
H:SER24
|
4.6
|
24.6
|
1.0
|
|
CA
|
H:MET21
|
4.6
|
23.7
|
1.0
|
|
N
|
H:ILE112
|
4.6
|
25.2
|
1.0
|
|
O
|
H:SER110
|
4.7
|
22.3
|
1.0
|
|
N
|
H:ALA25
|
4.7
|
26.3
|
1.0
|
|
O
|
H:SER24
|
4.8
|
27.7
|
1.0
|
|
CB
|
H:PRO111
|
4.8
|
21.4
|
1.0
|
|
CA
|
H:ILE112
|
4.9
|
26.6
|
1.0
|
|
O
|
H:HOH1678
|
5.0
|
27.6
|
1.0
|
|
Sodium binding site 9 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 9 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 9 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Na1665
b:24.7
occ:1.00
|
O
|
I:PRO111
|
2.4
|
22.6
|
1.0
|
|
O
|
I:HOH1686
|
2.4
|
25.3
|
1.0
|
|
OG
|
I:SER24
|
2.4
|
23.5
|
1.0
|
|
OG
|
I:SER110
|
2.4
|
22.3
|
1.0
|
|
O
|
I:HOH1675
|
2.5
|
29.0
|
1.0
|
|
O
|
I:HOH1678
|
2.5
|
29.7
|
1.0
|
|
CB
|
I:SER24
|
3.5
|
22.4
|
1.0
|
|
C
|
I:PRO111
|
3.6
|
23.0
|
1.0
|
|
CB
|
I:SER110
|
3.6
|
20.7
|
1.0
|
|
N
|
I:PRO111
|
3.8
|
21.5
|
1.0
|
|
CD
|
I:PRO111
|
3.8
|
21.9
|
1.0
|
|
C
|
I:SER110
|
4.0
|
21.7
|
1.0
|
|
CG
|
I:PRO111
|
4.0
|
22.8
|
1.0
|
|
CA
|
I:PRO111
|
4.2
|
22.0
|
1.0
|
|
O
|
I:MET21
|
4.3
|
26.4
|
1.0
|
|
O
|
I:HOH1770
|
4.3
|
49.8
|
1.0
|
|
CA
|
I:SER110
|
4.3
|
20.3
|
1.0
|
|
OE1
|
I:GLN113
|
4.3
|
29.7
|
1.0
|
|
O
|
I:HOH1681
|
4.5
|
28.9
|
1.0
|
|
OG
|
I:SER93
|
4.5
|
22.7
|
1.0
|
|
C
|
I:SER24
|
4.5
|
25.5
|
1.0
|
|
O
|
I:SER110
|
4.6
|
21.9
|
1.0
|
|
CA
|
I:MET21
|
4.6
|
23.7
|
1.0
|
|
CA
|
I:SER24
|
4.6
|
23.3
|
1.0
|
|
N
|
I:ILE112
|
4.7
|
24.6
|
1.0
|
|
O
|
I:SER24
|
4.7
|
25.8
|
1.0
|
|
N
|
I:ALA25
|
4.8
|
24.9
|
1.0
|
|
CB
|
I:PRO111
|
4.8
|
22.5
|
1.0
|
|
O
|
I:HOH1685
|
4.9
|
24.6
|
1.0
|
|
CA
|
I:ILE112
|
4.9
|
25.8
|
1.0
|
|
C
|
I:MET21
|
4.9
|
24.9
|
1.0
|
|
Sodium binding site 10 out
of 10 in 1p0z
Go back to
Sodium Binding Sites List in 1p0z
Sodium binding site 10 out
of 10 in the Sensor Kinase Cita Binding Domain
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 10 of Sensor Kinase Cita Binding Domain within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Na1669
b:23.9
occ:1.00
|
O
|
J:HOH1683
|
2.3
|
32.3
|
1.0
|
|
O
|
J:HOH1696
|
2.4
|
30.3
|
1.0
|
|
O
|
J:HOH1684
|
2.4
|
30.1
|
1.0
|
|
O
|
J:PRO111
|
2.4
|
22.8
|
1.0
|
|
OG
|
J:SER24
|
2.5
|
24.8
|
1.0
|
|
OG
|
J:SER110
|
2.5
|
21.9
|
1.0
|
|
CB
|
J:SER24
|
3.5
|
21.8
|
1.0
|
|
C
|
J:PRO111
|
3.6
|
23.4
|
1.0
|
|
CB
|
J:SER110
|
3.6
|
21.1
|
1.0
|
|
N
|
J:PRO111
|
3.8
|
21.4
|
1.0
|
|
CD
|
J:PRO111
|
3.9
|
21.9
|
1.0
|
|
CG
|
J:PRO111
|
4.1
|
22.6
|
1.0
|
|
O
|
J:HOH1743
|
4.1
|
51.6
|
1.0
|
|
C
|
J:SER110
|
4.1
|
21.4
|
1.0
|
|
OE1
|
J:GLN113
|
4.3
|
31.2
|
1.0
|
|
O
|
J:MET21
|
4.3
|
27.5
|
1.0
|
|
CA
|
J:PRO111
|
4.3
|
22.7
|
1.0
|
|
CA
|
J:SER110
|
4.4
|
20.9
|
1.0
|
|
O
|
J:HOH1691
|
4.4
|
27.2
|
1.0
|
|
OG
|
J:SER93
|
4.5
|
21.4
|
1.0
|
|
C
|
J:SER24
|
4.6
|
24.8
|
1.0
|
|
CA
|
J:MET21
|
4.6
|
25.8
|
1.0
|
|
CA
|
J:SER24
|
4.7
|
23.9
|
1.0
|
|
N
|
J:ILE112
|
4.7
|
23.9
|
1.0
|
|
N
|
J:ALA25
|
4.8
|
25.6
|
1.0
|
|
O
|
J:SER110
|
4.8
|
22.4
|
1.0
|
|
O
|
J:SER24
|
4.8
|
25.6
|
1.0
|
|
CB
|
J:PRO111
|
4.8
|
22.4
|
1.0
|
|
O
|
J:HOH1687
|
4.9
|
26.5
|
1.0
|
|
C
|
J:MET21
|
4.9
|
26.7
|
1.0
|
|
CA
|
J:ILE112
|
5.0
|
24.8
|
1.0
|
|
Reference:
S.Reinelt,
E.Hofmann,
T.Gerharz,
M.Bott,
D.R.Madden.
The Structure of the Periplasmic Ligand-Binding Domain of the Sensor Kinase Cita Reveals the First Extracellular Pas Domain. J.Biol.Chem. V. 278 39189 2003.
ISSN: ISSN 0021-9258
PubMed: 12867417
DOI: 10.1074/JBC.M305864200
Page generated: Sun Oct 6 21:14:07 2024
|
