Atomistry » Sodium » PDB 1nnh-1oan » 1nss
Atomistry »
  Sodium »
    PDB 1nnh-1oan »
      1nss »

Sodium in PDB 1nss: Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose

Enzymatic activity of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose

All present enzymatic activity of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose:
5.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose, PDB code: 1nss was solved by H.M.Holden, J.B.Thoden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.900, 76.200, 210.900, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 21.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose (pdb code 1nss). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose, PDB code: 1nss:

Sodium binding site 1 out of 1 in 1nss

Go back to Sodium Binding Sites List in 1nss
Sodium binding site 1 out of 1 in the Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Mutant D243A Complexed with Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1401

b:51.0
occ:1.00
OD1 A:ASP13 2.4 35.0 1.0
OD1 B:ASP13 2.4 24.3 1.0
O A:HOH1591 2.5 28.9 1.0
O A:HOH1404 2.5 20.5 1.0
CG A:ASP13 2.9 32.0 1.0
OD2 A:ASP13 3.0 20.7 1.0
CG B:ASP13 3.2 22.9 1.0
OD2 B:ASP13 3.3 18.4 1.0
O A:GLY11 4.1 26.9 1.0
O B:GLY11 4.2 24.9 1.0
CB A:ASP13 4.3 17.0 1.0
O B:SER12 4.4 17.5 1.0
CB B:ASP13 4.6 17.4 1.0
O A:SER12 4.7 21.8 1.0
CA A:ASP13 4.7 12.4 1.0
OD1 A:ASP7 4.7 98.9 1.0
C B:SER12 4.8 19.7 1.0
CA B:ASP7 4.8 17.7 1.0
C A:SER12 4.8 23.2 1.0
N A:ASP13 4.8 16.1 1.0
C B:GLY11 4.8 26.0 1.0
CA B:ASP13 4.8 16.9 1.0
CB B:ASP7 4.9 16.9 1.0
C A:GLY11 4.9 23.1 1.0
N B:ASP13 4.9 22.7 1.0

Reference:

J.B.Thoden, J.Kim, F.M.Raushel, H.M.Holden. The Catalytic Mechanism of Galactose Mutarotase Protein Sci. V. 12 1051 2003.
ISSN: ISSN 0961-8368
PubMed: 12717027
DOI: 10.1110/PS.0243203
Page generated: Tue Dec 15 05:31:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy