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Sodium in PDB 1no5: Structure of HI0073 From Haemophilus Influenzae, the Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase.

Protein crystallography data

The structure of Structure of HI0073 From Haemophilus Influenzae, the Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase., PDB code: 1no5 was solved by C.Lehmann, S.Pullalarevu, A.Galkin, W.Krajewski, M.A.Willis, A.Howard, O.Herzberg, Structure 2 Function Project (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.79 / 1.80
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 89.560, 89.560, 61.480, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 28.2

Other elements in 1no5:

The structure of Structure of HI0073 From Haemophilus Influenzae, the Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase. also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of HI0073 From Haemophilus Influenzae, the Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase. (pdb code 1no5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of HI0073 From Haemophilus Influenzae, the Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase., PDB code: 1no5:

Sodium binding site 1 out of 1 in 1no5

Go back to Sodium Binding Sites List in 1no5
Sodium binding site 1 out of 1 in the Structure of HI0073 From Haemophilus Influenzae, the Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of HI0073 From Haemophilus Influenzae, the Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na701

b:20.1
occ:1.00
O1 B:SO4602 1.6 60.5 1.0
O4 B:SO4601 2.5 70.5 1.0
O1 B:SO4601 2.6 74.7 1.0
O B:HOH1230 2.6 43.8 1.0
S B:SO4601 3.1 33.3 1.0
S B:SO4602 3.1 47.7 1.0
O4 B:SO4602 3.8 0.2 1.0
O3 B:SO4602 3.8 36.4 1.0
O2 B:SO4602 3.9 70.5 1.0
O3 B:SO4601 4.0 43.9 1.0
OE2 B:GLU67 4.1 24.1 1.0
O2 B:SO4601 4.1 47.9 1.0
ZN B:ZN571 4.2 30.1 1.0
CD B:GLU67 4.9 27.3 1.0

Reference:

C.Lehmann, S.Pullalarevu, W.Krajewski, M.A.Willis, A.Galkin, A.Howard, O.Herzberg. Structure of HI0073 From Haemophilus Influenzae, the Nucleotide-Binding Domain of A Two-Protein Nucleotidyl Transferase Proteins V. 60 807 2005.
ISSN: ISSN 0887-3585
PubMed: 16028221
DOI: 10.1002/PROT.20586
Page generated: Tue Dec 15 05:31:27 2020

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