Sodium in the structure of Structure Of HI0073 From Haemophilus Influenzae, The Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase. (pdb 1no5)

The binding sites of Sodium atom in the structure of Structure Of HI0073 From Haemophilus Influenzae, The Nucleotide Binding Domain of the HI0073/HI0074 Two Protein Nucleotidyl Transferase. (pdb code 1no5). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1no5 structure was solved by C.LEHMANN, S.PULLALAREVU, A.GALKIN, W.KRAJEWSKI, M.A.WILLIS, A.HOWARD, O.HERZBERG, STRUCTURE 2 FUNCTION PROJECT (S2F), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 19.8-1.8 Space group P63 a (A) 89.560 b (A) 89.560 c (A) 61.480 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 20 Rfree (%) 28.2 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1no5 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1no5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Glu67, B: Zn571, B: So4601, B: So4602, B: Hoh1230, conact list: Atom Atom Distance (A) Na OE2 B:Glu67 4.05 Na CD B:Glu67 4.92 Na ZN B:Zn571 4.21 Na S B:So4601 3.06 Na O1 B:So4601 2.55 Na O2 B:So4601 4.15 Na O4 B:So4601 2.48 Na O3 B:So4601 3.97 Na S B:So4602 3.12 Na O1 B:So4602 1.63 Na O2 B:So4602 3.89 Na O4 B:So4602 3.80 Na O3 B:So4602 3.85 Na O B:Hoh1230 2.59 interactive model: