Atomistry » Sodium » PDB 1nnh-1oan » 1nnw
Atomistry »
  Sodium »
    PDB 1nnh-1oan »
      1nnw »

Sodium in PDB 1nnw: Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608

Protein crystallography data

The structure of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608, PDB code: 1nnw was solved by Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 50.140, 50.842, 64.403, 83.70, 81.64, 81.77
R / Rfree (%) 21.6 / 23.5

Other elements in 1nnw:

The structure of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 also contains other interesting chemical elements:

Platinum (Pt) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 (pdb code 1nnw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608, PDB code: 1nnw:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 1nnw

Go back to Sodium Binding Sites List in 1nnw
Sodium binding site 1 out of 2 in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:35.3
occ:1.00
O A:TYR186 2.2 31.7 1.0
O A:TYR168 2.4 32.8 1.0
O A:LYS166 2.4 31.7 1.0
C A:TYR186 3.2 32.6 1.0
C A:LYS166 3.3 31.4 1.0
C A:TYR168 3.4 32.6 1.0
CA A:LYS166 3.8 30.3 1.0
N A:GLY187 4.0 32.1 1.0
N A:TYR168 4.0 33.0 1.0
CA A:TYR186 4.1 32.7 1.0
CA A:GLY187 4.1 31.8 1.0
N A:GLU169 4.2 32.4 1.0
CA A:GLU169 4.3 32.6 1.0
CA A:TYR168 4.4 32.5 1.0
CB A:LYS166 4.4 30.4 1.0
OE2 A:GLU169 4.4 43.5 1.0
C A:ASP167 4.4 33.3 1.0
N A:ASP167 4.4 32.7 1.0
OE1 A:GLU169 4.5 43.8 1.0
CD A:GLU169 4.6 40.9 1.0
CE A:MET162 4.8 29.6 1.0
CA A:ASP167 4.8 33.6 1.0
CB A:TYR186 4.8 32.6 1.0
O A:VAL165 4.9 28.1 1.0
O A:ASP167 5.0 33.5 1.0
C A:GLU169 5.0 31.8 1.0

Sodium binding site 2 out of 2 in 1nnw

Go back to Sodium Binding Sites List in 1nnw
Sodium binding site 2 out of 2 in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na303

b:31.7
occ:1.00
O B:TYR186 2.1 31.6 1.0
O B:TYR168 2.4 27.2 1.0
O B:LYS166 2.5 29.8 1.0
C B:TYR186 3.1 31.3 1.0
C B:TYR168 3.4 28.0 1.0
C B:LYS166 3.5 29.5 1.0
CA B:LYS166 3.9 29.2 1.0
N B:GLY187 3.9 30.3 1.0
CA B:GLY187 4.0 29.9 1.0
CA B:TYR186 4.0 31.6 1.0
N B:TYR168 4.1 29.3 1.0
N B:GLU169 4.2 27.4 1.0
CA B:GLU169 4.2 27.7 1.0
CB B:LYS166 4.3 29.8 1.0
CA B:TYR168 4.4 28.4 1.0
C B:ASP167 4.5 29.9 1.0
N B:ASP167 4.6 30.0 1.0
CE B:MET162 4.7 26.6 1.0
CB B:TYR186 4.7 31.0 1.0
C B:GLU169 5.0 27.4 1.0
O B:VAL165 5.0 27.9 1.0

Reference:

Southeast Collaboratory For Structural Genomics, Southeast Collaboratory For Structural Genomics (Secsg). N/A N/A.
Page generated: Tue Dec 15 05:31:27 2020

Last articles

Zn in 7OQY
Zn in 7PEL
Zn in 7OYG
Zn in 7P3S
Zn in 7PE7
Zn in 7RZC
Zn in 7PE9
Zn in 7PE8
Zn in 7RAG
Zn in 7RN5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy