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Sodium in PDB 1nnw: Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608

Protein crystallography data

The structure of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608, PDB code: 1nnw was solved by Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 50.140, 50.842, 64.403, 83.70, 81.64, 81.77
R / Rfree (%) 21.6 / 23.5

Other elements in 1nnw:

The structure of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 also contains other interesting chemical elements:

Platinum (Pt) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 (pdb code 1nnw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608, PDB code: 1nnw:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 1nnw

Go back to Sodium Binding Sites List in 1nnw
Sodium binding site 1 out of 2 in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:35.3
occ:1.00
O A:TYR186 2.2 31.7 1.0
O A:TYR168 2.4 32.8 1.0
O A:LYS166 2.4 31.7 1.0
C A:TYR186 3.2 32.6 1.0
C A:LYS166 3.3 31.4 1.0
C A:TYR168 3.4 32.6 1.0
CA A:LYS166 3.8 30.3 1.0
N A:GLY187 4.0 32.1 1.0
N A:TYR168 4.0 33.0 1.0
CA A:TYR186 4.1 32.7 1.0
CA A:GLY187 4.1 31.8 1.0
N A:GLU169 4.2 32.4 1.0
CA A:GLU169 4.3 32.6 1.0
CA A:TYR168 4.4 32.5 1.0
CB A:LYS166 4.4 30.4 1.0
OE2 A:GLU169 4.4 43.5 1.0
C A:ASP167 4.4 33.3 1.0
N A:ASP167 4.4 32.7 1.0
OE1 A:GLU169 4.5 43.8 1.0
CD A:GLU169 4.6 40.9 1.0
CE A:MET162 4.8 29.6 1.0
CA A:ASP167 4.8 33.6 1.0
CB A:TYR186 4.8 32.6 1.0
O A:VAL165 4.9 28.1 1.0
O A:ASP167 5.0 33.5 1.0
C A:GLU169 5.0 31.8 1.0

Sodium binding site 2 out of 2 in 1nnw

Go back to Sodium Binding Sites List in 1nnw
Sodium binding site 2 out of 2 in the Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Hypothetical Protein From Pyrococcus Furiosus Pfu-1218608 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na303

b:31.7
occ:1.00
O B:TYR186 2.1 31.6 1.0
O B:TYR168 2.4 27.2 1.0
O B:LYS166 2.5 29.8 1.0
C B:TYR186 3.1 31.3 1.0
C B:TYR168 3.4 28.0 1.0
C B:LYS166 3.5 29.5 1.0
CA B:LYS166 3.9 29.2 1.0
N B:GLY187 3.9 30.3 1.0
CA B:GLY187 4.0 29.9 1.0
CA B:TYR186 4.0 31.6 1.0
N B:TYR168 4.1 29.3 1.0
N B:GLU169 4.2 27.4 1.0
CA B:GLU169 4.2 27.7 1.0
CB B:LYS166 4.3 29.8 1.0
CA B:TYR168 4.4 28.4 1.0
C B:ASP167 4.5 29.9 1.0
N B:ASP167 4.6 30.0 1.0
CE B:MET162 4.7 26.6 1.0
CB B:TYR186 4.7 31.0 1.0
C B:GLU169 5.0 27.4 1.0
O B:VAL165 5.0 27.9 1.0

Reference:

Southeast Collaboratory For Structural Genomics, Southeast Collaboratory For Structural Genomics (Secsg). N/A N/A.
Page generated: Tue Dec 15 05:31:27 2020

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