Sodium binding site 1 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: L: Pro59, L: Ala60, L: Arg61, |
conact list:
Atom | Atom | Distance (A) | Na | CB L:Pro59 | 4.34 | Na | C L:Pro59 | 4.85 | Na | CA L:Pro59 | 4.83 | Na | N L:Ala60 | 4.19 | Na | C L:Ala60 | 4.79 | Na | CB L:Ala60 | 4.63 | Na | CA L:Ala60 | 4.78 | Na | N L:Arg61 | 3.91 | Na | CB L:Arg61 | 3.87 | Na | CD L:Arg61 | 4.17 | Na | CZ L:Arg61 | 4.72 | Na | CG L:Arg61 | 4.08 | Na | NE L:Arg61 | 4.92 | Na | NH1 L:Arg61 | 3.63 | Na | CA L:Arg61 | 4.51 |
| interactive model:
|
Sodium binding site 2 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: L: Lys39, L: Pro40, L: Asp41, L: Hoh1014, |
conact list:
Atom | Atom | Distance (A) | Na | O L:Lys39 | 4.93 | Na | CB L:Lys39 | 3.55 | Na | CE L:Lys39 | 4.37 | Na | CD L:Lys39 | 4.40 | Na | C L:Lys39 | 4.43 | Na | CG L:Lys39 | 4.26 | Na | CA L:Lys39 | 4.51 | Na | NZ L:Lys39 | 4.68 | Na | O L:Pro40 | 4.80 | Na | N L:Pro40 | 4.36 | Na | CD L:Pro40 | 4.20 | Na | C L:Pro40 | 4.73 | Na | CA L:Pro40 | 4.96 | Na | N L:Asp41 | 4.99 | Na | CB L:Asp41 | 4.89 | Na | OD2 L:Asp41 | 3.66 | Na | OD1 L:Asp41 | 2.66 | Na | CG L:Asp41 | 3.51 | Na | O L:Hoh1014 | 4.73 |
| interactive model:
|
Sodium binding site 3 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Ala197, H: His198, H: Pro199, H: Ser202, H: Thr203, H: Lys204, |
conact list:
Atom | Atom | Distance (A) | Na | C H:Ala197 | 4.63 | Na | CB H:Ala197 | 4.10 | Na | CA H:Ala197 | 4.58 | Na | O H:His198 | 3.98 | Na | N H:His198 | 4.30 | Na | C H:His198 | 4.06 | Na | CA H:His198 | 4.94 | Na | O H:Pro199 | 4.84 | Na | N H:Pro199 | 3.98 | Na | CB H:Pro199 | 4.78 | Na | CD H:Pro199 | 4.81 | Na | C H:Pro199 | 4.85 | Na | CA H:Pro199 | 3.88 | Na | O H:Ser202 | 4.50 | Na | N H:Ser202 | 4.88 | Na | C H:Ser202 | 4.15 | Na | CA H:Ser202 | 4.39 | Na | O H:Thr203 | 2.81 | Na | N H:Thr203 | 4.17 | Na | C H:Thr203 | 3.90 | Na | CA H:Thr203 | 4.64 | Na | N H:Lys204 | 4.88 | Na | CE H:Lys204 | 3.77 | Na | CD H:Lys204 | 4.38 | Na | CG H:Lys204 | 3.77 |
| interactive model:
|
Sodium binding site 4 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Pro211, H: Arg212, H: Hoh1017, H: Hoh1023, |
conact list:
Atom | Atom | Distance (A) | Na | O H:Pro211 | 3.85 | Na | C H:Pro211 | 4.87 | Na | O H:Arg212 | 4.56 | Na | C H:Arg212 | 3.97 | Na | OXT H:Arg212 | 2.85 | Na | O H:Hoh1017 | 2.57 | Na | O H:Hoh1023 | 4.46 |
| interactive model:
|
Sodium binding site 5 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Val151, H: Thr152, H: Trp153, H: Ser155, H: Gly156, H: Ser157, H: Leu158, H: Ser159, H: Val162, H: Hoh1026, |
conact list:
Atom | Atom | Distance (A) | Na | O H:Val151 | 4.96 | Na | O H:Thr152 | 4.82 | Na | N H:Thr152 | 4.84 | Na | CB H:Thr152 | 3.45 | Na | CG2 H:Thr152 | 4.23 | Na | OG1 H:Thr152 | 4.54 | Na | C H:Thr152 | 3.61 | Na | CA H:Thr152 | 3.44 | Na | N H:Trp153 | 2.83 | Na | CB H:Trp153 | 4.12 | Na | CD1 H:Trp153 | 4.89 | Na | C H:Trp153 | 4.00 | Na | CG H:Trp153 | 4.91 | Na | CA H:Trp153 | 3.80 | Na | O H:Trp153 | 3.44 | Na | C H:Ser155 | 4.64 | Na | O H:Gly156 | 4.32 | Na | N H:Gly156 | 3.34 | Na | C H:Gly156 | 3.74 | Na | CA H:Gly156 | 2.90 | Na | N H:Ser157 | 4.35 | Na | O H:Leu158 | 3.00 | Na | N H:Leu158 | 4.60 | Na | C H:Leu158 | 3.90 | Na | CA H:Leu158 | 4.95 | Na | N H:Ser159 | 4.41 | Na | CA H:Ser159 | 4.40 | Na | CG2 H:Val162 | 4.55 | Na | O H:Hoh1026 | 3.07 |
| interactive model:
|
Sodium binding site 6 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ile27C, A: Thr28, A: Ser29, A: Asn31, A: Tyr32, A: Ala33, A: Val50, A: Leu66, |
conact list:
Atom | Atom | Distance (A) | Na | CD1 A:Ile27C | 4.58 | Na | O A:Thr28 | 3.46 | Na | C A:Thr28 | 4.08 | Na | O A:Ser29 | 3.96 | Na | N A:Ser29 | 4.30 | Na | C A:Ser29 | 4.19 | Na | CA A:Ser29 | 3.90 | Na | O A:Asn31 | 4.78 | Na | N A:Asn31 | 4.54 | Na | CB A:Asn31 | 4.56 | Na | C A:Asn31 | 4.11 | Na | CA A:Asn31 | 4.62 | Na | O A:Tyr32 | 4.81 | Na | N A:Tyr32 | 3.43 | Na | C A:Tyr32 | 3.68 | Na | CA A:Tyr32 | 3.58 | Na | O A:Ala33 | 4.25 | Na | N A:Ala33 | 2.98 | Na | C A:Ala33 | 4.58 | Na | CB A:Ala33 | 3.67 | Na | CA A:Ala33 | 3.88 | Na | O A:Val50 | 3.67 | Na | CB A:Val50 | 4.77 | Na | C A:Val50 | 4.08 | Na | CG1 A:Val50 | 4.13 | Na | CA A:Val50 | 4.08 | Na | CD1 A:Leu66 | 4.12 | Na | CD2 A:Leu66 | 4.92 | Na | CG A:Leu66 | 4.99 |
| interactive model:
|
Sodium binding site 7 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His42, B: Val89, B: Gln105, B: Gly106, B: Thr107, B: Leu108, B: Hoh1015, B: Hoh1029, |
conact list:
Atom | Atom | Distance (A) | Na | CD2 A:His42 | 4.13 | Na | CG1 B:Val89 | 4.10 | Na | O B:Gln105 | 3.73 | Na | C B:Gln105 | 4.53 | Na | O B:Gly106 | 3.84 | Na | N B:Gly106 | 4.91 | Na | C B:Gly106 | 4.05 | Na | CA B:Gly106 | 4.55 | Na | N B:Thr107 | 4.49 | Na | C B:Thr107 | 4.87 | Na | CA B:Thr107 | 4.73 | Na | N B:Leu108 | 4.49 | Na | CB B:Leu108 | 4.96 | Na | O B:Hoh1015 | 4.16 | Na | O B:Hoh1029 | 4.76 |
| interactive model:
|
Sodium binding site 8 out of 8 in 1nj9
|
 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Sodium in the PDB 1nj9. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Val151, B: Thr152, B: Trp153, B: Gly156, B: Leu158, B: Ser159, B: Val162, |
conact list:
Atom | Atom | Distance (A) | Na | O B:Val151 | 4.88 | Na | CB B:Thr152 | 4.28 | Na | CG2 B:Thr152 | 4.66 | Na | C B:Thr152 | 4.57 | Na | CA B:Thr152 | 4.10 | Na | N B:Trp153 | 3.97 | Na | CB B:Trp153 | 4.97 | Na | CD1 B:Trp153 | 4.64 | Na | CA B:Trp153 | 5.00 | Na | O B:Trp153 | 4.92 | Na | O B:Gly156 | 4.86 | Na | N B:Gly156 | 4.92 | Na | C B:Gly156 | 4.68 | Na | CA B:Gly156 | 4.12 | Na | O B:Leu158 | 3.09 | Na | C B:Leu158 | 3.99 | Na | O B:Ser159 | 4.91 | Na | N B:Ser159 | 4.31 | Na | CB B:Ser159 | 4.50 | Na | C B:Ser159 | 4.86 | Na | CA B:Ser159 | 3.84 | Na | CB B:Val162 | 4.86 | Na | CG2 B:Val162 | 4.33 | Na | CG1 B:Val162 | 4.68 |
| interactive model:
|