Chemical elements
  Sodium
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    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in the structure of Structure of Large Ribosomal Subunit in Complex With Virginiamycin M (pdb 1n8r)






The binding sites of Sodium atom in the structure of Structure of Large Ribosomal Subunit in Complex With Virginiamycin M (pdb code 1n8r). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 1n8r structure was solved by J.L.HANSEN, P.B.MOORE, T.A.STEITZ, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-3.0
Space groupC2221
a (A)212.902
b (A)300.474
c (A)575.176
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)20.1
Rfree (%)24.2


Sodium Binding Sites:

Sodium binding site 1 out of 86 in 1n8r


Sodium binding site 1 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 1 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C1068, A: C1069, A: A1070, A: G1072, A: G1087, A: Hoh3558, A: Hoh3590, A: Hoh3930, A: Hoh4661, A: Hoh5360, A: Hoh9473,

conact list:


AtomAtomDistance (A)
NaC3' A:C10684.50
NaO3' A:C10684.43
NaOP2 A:C10684.92
NaC5' A:C10684.48
NaOP1 A:C10694.56
NaP A:C10693.84
NaOP2 A:C10692.45
NaO5' A:C10694.93
NaN6 A:A10704.98
NaN9 A:G10724.65
NaC8 A:G10723.59
NaC6 A:G10723.52
NaN1 A:G10724.86
NaC5 A:G10723.28
NaN7 A:G10722.53
NaC4 A:G10724.50
NaO6 A:G10723.15
NaC6 A:G10874.10
NaN1 A:G10874.71
NaO6 A:G10873.11
NaO A:Hoh35582.62
NaO A:Hoh35902.77
NaO A:Hoh39303.99
NaO A:Hoh46614.88
NaO A:Hoh53602.14
NaO A:Hoh94733.32

interactive model:


Sodium binding site 2 out of 86 in 1n8r


Sodium binding site 2 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 2 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1119, A: U1120, A: G1121, A: U1122, A: C1238, A: A1242, A: C1243, A: Mg8025, A: Hoh4561, A: Hoh4933, A: Hoh6070, A: Hoh7314, A: Hoh8277, A: Hoh8278,

conact list:


AtomAtomDistance (A)
NaC3' A:G11194.05
NaC1' A:G11194.39
NaO3' A:G11193.18
NaC2' A:G11193.87
NaO2' A:G11192.80
NaOP1 A:U11204.52
NaP A:U11203.66
NaOP2 A:U11202.91
NaO5' A:U11204.89
NaC8 A:G11214.62
NaC6 A:G11213.81
NaC5 A:G11213.96
NaN7 A:G11213.42
NaO6 A:G11213.02
NaC5 A:U11224.80
NaC4 A:U11224.44
NaO4 A:U11223.69
NaOP1 A:C12384.88
NaN6 A:A12424.99
NaN4 A:C12434.86
NaMG A:Mg80253.73
NaO A:Hoh45613.30
NaO A:Hoh49333.08
NaO A:Hoh60702.91
NaO A:Hoh73144.13
NaO A:Hoh82774.70
NaO A:Hoh82783.11

interactive model:


Sodium binding site 3 out of 86 in 1n8r


Sodium binding site 3 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 3 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A643, A: G644, A: U904, A: C1353, A: G1354, M: Arg8, A: Hoh3652, A: Hoh4990, A: Hoh9825,

conact list:


AtomAtomDistance (A)
NaOP1 A:A6433.81
NaC3' A:A6434.71
NaP A:A6433.59
NaO3' A:A6434.93
NaOP2 A:A6433.05
NaC5' A:A6434.47
NaO5' A:A6433.56
NaOP1 A:G6443.18
NaP A:G6444.43
NaOP2 A:G6444.98
NaN3 A:U9044.04
NaC4 A:U9043.88
NaO4 A:U9042.92
NaOP1 A:C13533.72
NaP A:C13534.72
NaO3' A:C13534.59
NaO5' A:C13534.87
NaOP1 A:G13542.95
NaP A:G13544.01
NaOP2 A:G13544.27
NaCZ M:Arg84.29
NaNE M:Arg84.90
NaNH2 M:Arg83.30
NaO A:Hoh36523.45
NaO A:Hoh49904.23
NaO A:Hoh98253.71

interactive model:


Sodium binding site 4 out of 86 in 1n8r


Sodium binding site 4 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 4 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A628, A: A629, A: A630, A: A631, A: A632, A: G2070, A: G2072, A: A2074, A: Hoh3473, A: Hoh4484, A: Hoh5090, A: Hoh6173, A: Hoh9803,

conact list:


AtomAtomDistance (A)
NaC2 A:A6284.77
NaC2 A:A6294.91
NaN1 A:A6294.71
NaN9 A:A6303.89
NaN3 A:A6302.69
NaC3' A:A6304.33
NaC2 A:A6303.60
NaN1 A:A6304.89
NaC5 A:A6304.95
NaC1' A:A6303.37
NaO3' A:A6303.81
NaO4' A:A6304.60
NaC4 A:A6303.62
NaC2' A:A6303.51
NaO2' A:A6302.56
NaC3' A:A6314.04
NaO3' A:A6314.39
NaC2' A:A6313.68
NaO2' A:A6313.00
NaOP1 A:A6323.95
NaP A:A6324.65
NaN2 A:G20704.26
NaOP2 A:G20724.91
NaOP2 A:A20743.77
NaO A:Hoh34734.46
NaO A:Hoh44842.46
NaO A:Hoh50902.47
NaO A:Hoh61732.41
NaO A:Hoh98034.52

interactive model:


Sodium binding site 5 out of 86 in 1n8r


Sodium binding site 5 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 5 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2092, A: G2093, A: G2094, A: A2612, A: A2649, A: Hoh9528,

conact list:


AtomAtomDistance (A)
NaN9 A:G20924.55
NaN3 A:G20923.25
NaN2 A:G20923.65
NaC2 A:G20923.64
NaN1 A:G20924.64
NaC1' A:G20924.36
NaO3' A:G20924.82
NaC4 A:G20924.07
NaC2' A:G20924.35
NaO2' A:G20923.23
NaN9 A:G20934.68
NaC8 A:G20933.88
NaC6 A:G20933.65
NaN1 A:G20934.80
NaC5 A:G20933.46
NaN7 A:G20933.03
NaC4 A:G20934.49
NaO6 A:G20933.42
NaC8 A:G20944.06
NaC6 A:G20943.77
NaC5 A:G20943.69
NaN7 A:G20942.94
NaC4 A:G20944.99
NaO6 A:G20943.19
NaC6 A:A26124.26
NaN1 A:A26124.77
NaC5 A:A26124.77
NaN6 A:A26123.85
NaN3 A:A26494.57
NaC2 A:A26493.30
NaC6 A:A26493.93
NaN1 A:A26492.84
NaN6 A:A26494.23
NaO A:Hoh95283.24

interactive model:


Sodium binding site 6 out of 86 in 1n8r


Sodium binding site 6 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 6 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G39, A: C40, A: G41, A: A442, A: C443, A: Hoh6253, A: Hoh7359,

conact list:


AtomAtomDistance (A)
NaN2 A:G394.30
NaC2 A:G394.80
NaN1 A:G394.97
NaN3 A:C404.75
NaC3' A:C404.71
NaC2 A:C403.57
NaN1 A:C403.96
NaC1' A:C403.39
NaO2 A:C402.52
NaO4' A:C404.67
NaC2' A:C403.19
NaO2' A:C402.82
NaN9 A:G414.01
NaC8 A:G414.39
NaC1' A:G413.70
NaO4' A:G412.87
NaC4 A:G414.70
NaC5' A:G414.27
NaC4' A:G414.02
NaO5' A:G414.63
NaN3 A:A4424.84
NaC2 A:A4423.58
NaC6 A:A4424.01
NaN1 A:A4423.01
NaN6 A:A4424.19
NaN3 A:C4434.37
NaC2 A:C4433.80
NaN1 A:C4434.61
NaC1' A:C4434.69
NaO2 A:C4433.03
NaO A:Hoh62534.77
NaO A:Hoh73594.91

interactive model:


Sodium binding site 7 out of 86 in 1n8r


Sodium binding site 7 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 7 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C1394, A: U1432, A: G1433, A: U1722, A: U1724, A: C1725, A: Hoh3802, A: Hoh5220, A: Hoh5852, A: Hoh7529, A: Hoh9693,

conact list:


AtomAtomDistance (A)
NaN3 A:C13944.47
NaC2 A:C13943.64
NaN1 A:C13944.51
NaC1' A:C13944.40
NaO2 A:C13942.44
NaC2' A:C13944.09
NaO2' A:C13943.77
NaN3 A:U14324.49
NaC4 A:U14323.91
NaO4 A:U14322.73
NaC6 A:G14334.28
NaN1 A:G14334.68
NaO6 A:G14333.70
NaOP2 A:U17224.90
NaN3 A:U17244.17
NaC2 A:U17243.32
NaN1 A:U17244.27
NaC1' A:U17244.24
NaO2 A:U17242.12
NaC2' A:U17244.38
NaO2' A:U17244.26
NaO2' A:C17254.92
NaO A:Hoh38022.75
NaO A:Hoh52204.39
NaO A:Hoh58524.65
NaO A:Hoh75293.94
NaO A:Hoh96933.76

interactive model:


Sodium binding site 8 out of 86 in 1n8r


Sodium binding site 8 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 8 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U2554, A: C2556, A: A2577, A: G2578, A: G2579, A: G2580, A: Hoh4894, A: Hoh5088, A: Hoh6356, A: Hoh6675, A: Hoh8223,

conact list:


AtomAtomDistance (A)
NaN3 A:U25544.75
NaN4 A:C25564.76
NaN9 A:A25773.83
NaN3 A:A25772.69
NaC3' A:A25774.91
NaC2 A:A25773.51
NaN1 A:A25774.72
NaC5 A:A25774.76
NaC1' A:A25773.44
NaO3' A:A25774.93
NaO4' A:A25772.96
NaC4 A:A25773.52
NaC2' A:A25774.84
NaC4' A:A25774.05
NaC8 A:G25784.42
NaC6 A:G25784.08
NaC5 A:G25783.99
NaN7 A:G25783.57
NaC4 A:G25785.00
NaO6 A:G25783.82
NaC8 A:G25794.45
NaC6 A:G25793.59
NaN1 A:G25794.93
NaC5 A:G25793.75
NaN7 A:G25793.24
NaO6 A:G25792.81
NaO6 A:G25804.41
NaO A:Hoh48942.92
NaO A:Hoh50884.90
NaO A:Hoh63564.88
NaO A:Hoh66754.03
NaO A:Hoh82233.87

interactive model:


Sodium binding site 9 out of 86 in 1n8r


Sodium binding site 9 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 9 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C2493, A: U2523, A: G2524, A: G2525, A: Hoh3970, A: Hoh4015, A: Hoh5043, A: Hoh6754, A: Hoh9584,

conact list:


AtomAtomDistance (A)
NaC2' A:C24934.70
NaO2' A:C24934.29
NaC6 A:U25234.68
NaC5 A:U25234.24
NaC4 A:U25234.43
NaOP2 A:U25234.98
NaO4 A:U25234.59
NaC8 A:G25243.78
NaC6 A:G25244.43
NaC5 A:G25243.98
NaN7 A:G25242.95
NaOP2 A:G25244.43
NaO6 A:G25244.11
NaC6 A:G25253.37
NaN1 A:G25254.37
NaC5 A:G25254.16
NaN7 A:G25254.28
NaO6 A:G25252.32
NaO A:Hoh39702.34
NaO A:Hoh40153.52
NaO A:Hoh50432.70
NaO A:Hoh67543.53
NaO A:Hoh95842.65

interactive model:


Sodium binding site 10 out of 86 in 1n8r


Sodium binding site 10 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 10 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U2389, A: U2390, A: A2398, A: G2399, A: G2400, A: Hoh3341, A: Hoh3782, A: Hoh4231, A: Hoh5461, A: Hoh5512, A: Hoh6446, A: Hoh6667, A: Hoh6897,

conact list:


AtomAtomDistance (A)
NaN3 A:U23894.43
NaC4 A:U23894.65
NaO4 A:U23893.94
NaO2 A:U23904.79
NaOP2 A:A23983.99
NaC8 A:G23994.49
NaC6 A:G23993.27
NaN1 A:G23994.59
NaC5 A:G23993.58
NaN7 A:G23993.23
NaC4 A:G23994.95
NaO6 A:G23992.42
NaC6 A:G24004.69
NaC5 A:G24004.89
NaN7 A:G24004.50
NaO6 A:G24004.02
NaO A:Hoh33412.43
NaO A:Hoh37823.60
NaO A:Hoh42312.29
NaO A:Hoh54613.23
NaO A:Hoh55122.06
NaO A:Hoh64463.37
NaO A:Hoh66674.20
NaO A:Hoh68973.40

interactive model:


Sodium binding site 11 out of 86 in 1n8r


Sodium binding site 11 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 11 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U2541, A: U2607, A: C2608, A: U2610, D: Trp242, A: Hoh3519, A: Hoh5077, A: Hoh8279, A: Hoh9492, A: Hoh9557, A: Hoh9729, A: Hoh9737, A: Hoh9880,

conact list:


AtomAtomDistance (A)
NaOP1 A:U25413.22
NaP A:U25414.26
NaOP2 A:U25414.31
NaC3' A:U26074.58
NaC2 A:U26074.24
NaN1 A:U26074.61
NaC1' A:U26074.24
NaO2 A:U26073.43
NaO3' A:U26074.21
NaC2' A:U26073.74
NaO2' A:U26072.38
NaOP1 A:C26084.77
NaP A:C26084.36
NaOP2 A:C26083.58
NaOP1 A:U26103.72
NaCE3 D:Trp2424.17
NaCZ3 D:Trp2423.41
NaCH2 D:Trp2424.18
NaO A:Hoh35193.26
NaO A:Hoh50774.17
NaO A:Hoh82793.86
NaO A:Hoh94924.75
NaO A:Hoh95573.97
NaO A:Hoh97292.53
NaO A:Hoh97374.85
NaO A:Hoh98803.90

interactive model:


Sodium binding site 12 out of 86 in 1n8r


Sodium binding site 12 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 12 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G164, A: A165, A: A166, A: A167, A: C168, A: G898, A: Mg8079, A: Hoh3078, A: Hoh4006, A: Hoh4024, A: Hoh5698, A: Hoh6702, A: Hoh9642, A: Hoh9921,

conact list:


AtomAtomDistance (A)
NaOP1 A:G1644.69
NaP A:G1644.91
NaOP2 A:G1644.46
NaOP1 A:A1654.17
NaP A:A1653.84
NaOP2 A:A1652.74
NaO5' A:A1654.46
NaN9 A:A1664.76
NaC3' A:A1663.63
NaC1' A:A1663.77
NaO3' A:A1662.56
NaO4' A:A1664.70
NaC2' A:A1663.57
NaC4' A:A1664.57
NaO2' A:A1662.89
NaOP1 A:A1672.83
NaP A:A1673.25
NaOP2 A:A1674.61
NaC5' A:A1673.55
NaC4' A:A1674.95
NaO5' A:A1673.84
NaOP2 A:C1685.00
NaO6 A:G8984.89
NaMG A:Mg80794.17
NaO A:Hoh30783.37
NaO A:Hoh40063.61
NaO A:Hoh40243.92
NaO A:Hoh56984.71
NaO A:Hoh67024.89
NaO A:Hoh96423.64
NaO A:Hoh99213.99

interactive model:


Sodium binding site 13 out of 86 in 1n8r


Sodium binding site 13 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 13 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U163, A: G164, A: A766, A: C896, A: A897, A: Hoh3078, A: Hoh3089, A: Hoh6702, A: Hoh8176, A: Hoh9433, A: Hoh9522,

conact list:


AtomAtomDistance (A)
NaOP1 A:U1634.70
NaOP1 A:G1644.72
NaN6 A:A7664.96
NaC3' A:C8964.63
NaC2 A:C8963.95
NaN1 A:C8964.35
NaC1' A:C8963.74
NaO2 A:C8962.89
NaO4' A:C8964.98
NaC2' A:C8963.18
NaO2' A:C8962.58
NaN9 A:A8974.39
NaC8 A:A8974.64
NaC1' A:A8973.86
NaO4' A:A8972.90
NaC5' A:A8974.07
NaC4' A:A8973.87
NaO5' A:A8974.46
NaO A:Hoh30783.30
NaO A:Hoh30893.49
NaO A:Hoh67022.12
NaO A:Hoh81763.49
NaO A:Hoh94332.73
NaO A:Hoh95224.83

interactive model:


Sodium binding site 14 out of 86 in 1n8r


Sodium binding site 14 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 14 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1416, A: G1417, A: C1686, 3: His41, 3: Trp42, 3: Arg43, 3: Asn45, 3: Asp46, A: Hoh9674, 3: Hoh826, 3: Hoh4135, 3: Hoh5293,

conact list:


AtomAtomDistance (A)
NaC3' A:G14163.81
NaO3' A:G14162.72
NaC2' A:G14164.01
NaC4' A:G14164.27
NaO2' A:G14163.25
NaOP1 A:G14172.78
NaP A:G14173.41
NaOP2 A:G14174.71
NaC5' A:G14173.80
NaO5' A:G14174.12
NaOP1 A:C16864.29
NaO 3:His414.89
NaC 3:Trp423.34
NaCA 3:Trp424.27
NaO 3:Trp422.17
NaO 3:Arg434.27
NaN 3:Arg434.24
NaC 3:Arg434.51
NaCA 3:Arg434.30
NaO 3:Asn452.76
NaC 3:Asn453.93
NaN 3:Asp464.56
NaCB 3:Asp464.86
NaOD2 3:Asp464.77
NaCA 3:Asp464.25
NaO A:Hoh96742.75
NaO 3:Hoh8263.93
NaO 3:Hoh41352.53
NaO 3:Hoh52933.46

interactive model:


Sodium binding site 15 out of 86 in 1n8r


Sodium binding site 15 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 15 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C2542, A: G2543, A: G2544, A: U2545, A: Na8320, A: Hoh3137, A: Hoh3270, A: Hoh3854, A: Hoh4328, A: Hoh5650, A: Hoh7883, A: Hoh8281, A: Hoh9461, A: Hoh9610, A: Hoh9636, A: Hoh9787,

conact list:


AtomAtomDistance (A)
NaOP2 A:C25424.95
NaC8 A:G25434.14
NaC6 A:G25433.97
NaC5 A:G25433.82
NaN7 A:G25433.23
NaC4 A:G25434.92
NaO6 A:G25433.63
NaN9 A:G25445.00
NaC8 A:G25443.98
NaC6 A:G25443.53
NaN1 A:G25444.86
NaC5 A:G25443.47
NaN7 A:G25442.86
NaC4 A:G25444.75
NaO6 A:G25443.01
NaC4 A:U25455.00
NaO4 A:U25454.44
NaNA A:Na83203.03
NaO A:Hoh31374.59
NaO A:Hoh32704.95
NaO A:Hoh38542.78
NaO A:Hoh43282.20
NaO A:Hoh56504.30
NaO A:Hoh78833.43
NaO A:Hoh82814.72
NaO A:Hoh94614.47
NaO A:Hoh96103.22
NaO A:Hoh96364.70
NaO A:Hoh97874.51

interactive model:


Sodium binding site 16 out of 86 in 1n8r


Sodium binding site 16 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 16 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A2465, A: G2466, M: Asp36, A: Hoh4650, A: Hoh6433, A: Hoh8224, A: Hoh9464, A: Hoh9911, M: Hoh8540, M: Hoh8541,

conact list:


AtomAtomDistance (A)
NaC3' A:A24654.20
NaC1' A:A24654.35
NaO3' A:A24652.96
NaO4' A:A24654.78
NaC2' A:A24654.51
NaC4' A:A24654.72
NaO2' A:A24654.24
NaN9 A:G24664.98
NaOP1 A:G24664.76
NaC8 A:G24664.15
NaC6 A:G24664.05
NaC5 A:G24663.82
NaP A:G24663.50
NaN7 A:G24663.36
NaC4 A:G24664.80
NaOP2 A:G24662.81
NaO5' A:G24664.25
NaO6 A:G24663.86
NaO M:Asp363.11
NaC M:Asp364.34
NaO A:Hoh46502.52
NaO A:Hoh64332.40
NaO A:Hoh82243.61
NaO A:Hoh94642.77
NaO A:Hoh99114.65
NaO M:Hoh85404.36
NaO M:Hoh85413.32

interactive model:


Sodium binding site 17 out of 86 in 1n8r


Sodium binding site 17 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 17 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C2542, A: G2543, A: G2544, A: G2611, A: C2614, A: U2615, A: Na8318, A: Hoh3137, A: Hoh7883, A: Hoh9461, A: Hoh9490, A: Hoh9610, A: Hoh9636,

conact list:


AtomAtomDistance (A)
NaC5 A:C25424.46
NaC4 A:C25424.66
NaN4 A:C25424.06
NaC6 A:G25433.92
NaC5 A:G25434.49
NaN7 A:G25434.28
NaO6 A:G25432.84
NaC6 A:G25444.32
NaC5 A:G25444.89
NaO6 A:G25443.67
NaN9 A:G26114.62
NaC8 A:G26113.94
NaC6 A:G26114.74
NaC5 A:G26114.19
NaN7 A:G26113.64
NaC4 A:G26114.79
NaO6 A:G26114.86
NaN4 A:C26143.97
NaN3 A:U26154.08
NaC4 A:U26153.87
NaO4 A:U26152.88
NaNA A:Na83183.03
NaO A:Hoh31372.77
NaO A:Hoh78834.48
NaO A:Hoh94612.87
NaO A:Hoh94902.58
NaO A:Hoh96104.69
NaO A:Hoh96364.19

interactive model:


Sodium binding site 18 out of 86 in 1n8r


Sodium binding site 18 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 18 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G836, A: U837, A: A1736, A: A1737, D: Arg229, D: Gln230, D: Gly231, A: Hoh3540, A: Hoh9516,

conact list:


AtomAtomDistance (A)
NaC3' A:G8363.89
NaO3' A:G8362.75
NaC2' A:G8364.26
NaC4' A:G8364.36
NaO2' A:G8363.50
NaOP1 A:U8373.03
NaP A:U8373.47
NaOP2 A:U8374.74
NaC5' A:U8374.06
NaO5' A:U8374.21
NaOP1 A:A17362.82
NaC3' A:A17364.78
NaP A:A17364.18
NaO3' A:A17364.13
NaC5' A:A17364.26
NaO5' A:A17364.44
NaOP1 A:A17374.09
NaP A:A17373.97
NaOP2 A:A17373.35
NaO D:Arg2292.50
NaC D:Arg2293.65
NaCA D:Arg2294.52
NaO D:Gln2304.37
NaN D:Gln2304.52
NaC D:Gln2304.16
NaCA D:Gln2304.59
NaN D:Gly2314.21
NaCA D:Gly2314.54
NaO A:Hoh35404.36
NaO A:Hoh95163.58

interactive model:


Sodium binding site 19 out of 86 in 1n8r


Sodium binding site 19 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 19 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G885, A: G2111, A: A2112, A: G2113, A: U2473, A: C2475, A: C2476, A: Hoh3092, A: Hoh3113, A: Hoh4052, A: Hoh4868,

conact list:


AtomAtomDistance (A)
NaO3' A:G8854.72
NaC2' A:G8854.50
NaO2' A:G8853.17
NaN2 A:G21114.57
NaN9 A:A21124.51
NaN3 A:A21122.88
NaC2 A:A21123.45
NaN1 A:A21124.74
NaC1' A:A21124.20
NaC4 A:A21124.00
NaC2' A:A21124.00
NaO2' A:A21123.86
NaN9 A:G21133.59
NaN3 A:G21134.36
NaC8 A:G21134.14
NaC5 A:G21134.78
NaC1' A:G21133.43
NaN7 A:G21134.84
NaO4' A:G21133.37
NaC4 A:G21134.05
NaC2' A:G21134.92
NaC4' A:G21134.78
NaO2 A:U24734.97
NaN3 A:C24753.00
NaC2 A:C24754.28
NaC5 A:C24754.46
NaO2 A:C24754.78
NaC4 A:C24753.08
NaN4 A:C24752.32
NaN3 A:C24764.55
NaC2 A:C24764.05
NaN1 A:C24764.71
NaC1' A:C24764.89
NaO2 A:C24763.52
NaO A:Hoh30924.98
NaO A:Hoh31134.73
NaO A:Hoh40523.76
NaO A:Hoh48682.49

interactive model:


Sodium binding site 20 out of 86 in 1n8r


Sodium binding site 20 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 20 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A45, A: C130, A: A132, A: A145, A: U146, A: G147, A: Hoh4523, A: Hoh7537, A: Hoh7732, A: Hoh9886,

conact list:


AtomAtomDistance (A)
NaO2' A:A453.73
NaN3 A:C1304.56
NaC2 A:C1303.83
NaN1 A:C1304.45
NaC1' A:C1304.39
NaO2 A:C1303.09
NaO2' A:C1304.91
NaN6 A:A1324.80
NaC5 A:A1454.86
NaN6 A:A1454.49
NaN7 A:A1454.19
NaN3 A:U1464.88
NaC5 A:U1464.12
NaC4 A:U1463.67
NaO4 A:U1462.66
NaC6 A:G1474.55
NaO6 A:G1473.40
NaO A:Hoh45232.93
NaO A:Hoh75373.02
NaO A:Hoh77323.97
NaO A:Hoh98862.94

interactive model:


Sodium binding site 21 out of 86 in 1n8r


Sodium binding site 21 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 21 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A776, A: U777, A: C778, A: U779, A: A780, A: G865, A: Mg8031, A: Hoh3019, A: Hoh3357, A: Hoh3666, A: Hoh4071, A: Hoh4430, A: Hoh7854, A: Hoh8152, A: Hoh8289, A: Hoh8291,

conact list:


AtomAtomDistance (A)
NaN9 A:A7764.93
NaC3' A:A7763.32
NaC1' A:A7763.75
NaO3' A:A7762.32
NaO4' A:A7764.52
NaC2' A:A7763.38
NaC4' A:A7764.34
NaO2' A:A7762.68
NaOP1 A:U7773.67
NaP A:U7772.98
NaOP2 A:U7772.70
NaC5' A:U7774.81
NaO5' A:U7774.38
NaOP2 A:C7784.05
NaN3 A:U7794.59
NaC5 A:U7794.17
NaC4 A:U7793.50
NaO4 A:U7792.41
NaN6 A:A7804.35
NaO6 A:G8654.94
NaMG A:Mg80313.21
NaO A:Hoh30192.44
NaO A:Hoh33573.96
NaO A:Hoh36662.37
NaO A:Hoh40714.25
NaO A:Hoh44304.73
NaO A:Hoh78543.63
NaO A:Hoh81522.57
NaO A:Hoh82894.94
NaO A:Hoh82913.66

interactive model:


Sodium binding site 22 out of 86 in 1n8r


Sodium binding site 22 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 22 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1945, A: C1946, A: G1971, A: G2009, A: A2010, A: U2012, A: Hoh6602, A: Hoh7958, A: Hoh9971,

conact list:


AtomAtomDistance (A)
NaOP2 A:G19454.54
NaC5 A:C19464.53
NaOP2 A:C19464.62
NaN4 A:C19464.71
NaC6 A:G19714.10
NaN1 A:G19714.11
NaO6 A:G19713.23
NaOP1 A:G20094.21
NaP A:G20094.08
NaO3' A:G20094.94
NaOP2 A:G20093.37
NaO5' A:G20094.23
NaOP1 A:A20104.47
NaP A:A20104.10
NaOP2 A:A20102.85
NaN3 A:U20124.38
NaC5 A:U20124.14
NaC4 A:U20123.35
NaO4 A:U20122.18
NaO A:Hoh66024.95
NaO A:Hoh79583.76
NaO A:Hoh99714.48

interactive model:


Sodium binding site 23 out of 86 in 1n8r


Sodium binding site 23 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 23 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G820, A: U821, A: C822, A: C853, A: G854, A: U1831, A: G1832, A: Mg8006, A: Hoh3123, A: Hoh3594, A: Hoh4013, A: Hoh4281, A: Hoh9440,

conact list:


AtomAtomDistance (A)
NaO3' A:G8203.95
NaO2' A:G8204.94
NaOP1 A:U8214.02
NaP A:U8213.76
NaOP2 A:U8212.99
NaOP1 A:C8224.54
NaOP2 A:C8224.76
NaC3' A:C8534.23
NaO3' A:C8532.96
NaC2' A:C8534.85
NaC4' A:C8534.63
NaO2' A:C8534.29
NaOP1 A:G8542.55
NaP A:G8543.39
NaOP2 A:G8544.52
NaC5' A:G8544.42
NaO5' A:G8544.43
NaC3' A:U18314.14
NaO3' A:U18313.33
NaC2' A:U18314.01
NaC4' A:U18314.50
NaO2' A:U18312.92
NaOP1 A:G18323.84
NaP A:G18324.30
NaC5' A:G18324.76
NaMG A:Mg80063.73
NaO A:Hoh31233.13
NaO A:Hoh35942.39
NaO A:Hoh40134.17
NaO A:Hoh42814.73
NaO A:Hoh94402.29

interactive model:


Sodium binding site 24 out of 86 in 1n8r


Sodium binding site 24 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 24 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G56, A: A59, A: A60, A: G61, A: C62, A: Hoh5605, A: Hoh6865,

conact list:


AtomAtomDistance (A)
NaC6 A:G563.84
NaN1 A:G564.86
NaC5 A:G564.64
NaN7 A:G564.70
NaO6 A:G562.67
NaN9 A:A594.24
NaN3 A:A592.86
NaC2 A:A593.43
NaN1 A:A594.57
NaC5 A:A594.87
NaC1' A:A594.06
NaO3' A:A594.82
NaC4 A:A593.76
NaC2' A:A594.67
NaO2' A:A593.97
NaN9 A:A604.84
NaC8 A:A604.32
NaC6 A:A603.50
NaN1 A:A604.34
NaC5 A:A603.53
NaN6 A:A603.36
NaN7 A:A603.51
NaC4 A:A604.41
NaN9 A:G614.93
NaC8 A:G613.85
NaC6 A:G613.54
NaN1 A:G614.92
NaC5 A:G613.44
NaN7 A:G612.71
NaC4 A:G614.74
NaO6 A:G613.00
NaC5 A:C624.85
NaC4 A:C624.62
NaN4 A:C623.98
NaO A:Hoh56052.93
NaO A:Hoh68652.99

interactive model:


Sodium binding site 25 out of 86 in 1n8r


Sodium binding site 25 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 25 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C65, A: G66, A: U107, A: U108, A: Hoh3485, A: Hoh6966,

conact list:


AtomAtomDistance (A)
NaO3' A:C654.98
NaOP1 A:G663.35
NaP A:G663.87
NaOP2 A:G663.41
NaN3 A:U1074.12
NaC4 A:U1073.94
NaO4 A:U1073.01
NaN3 A:U1083.98
NaC2 A:U1083.58
NaN1 A:U1084.68
NaO2 A:U1082.74
NaO A:Hoh34854.04
NaO A:Hoh69663.10

interactive model:


Sodium binding site 26 out of 86 in 1n8r


Sodium binding site 26 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 26 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C136, A: G140, A: C141, A: G142, A: C143, A: Hoh4239, A: Hoh4434, A: Hoh9632,

conact list:


AtomAtomDistance (A)
NaN4 A:C1364.86
NaN3 A:G1404.23
NaN2 A:G1403.66
NaC2 A:G1403.97
NaN1 A:G1404.62
NaN3 A:C1414.51
NaC3' A:C1414.83
NaC2 A:C1413.60
NaN1 A:C1414.12
NaC1' A:C1413.83
NaO2 A:C1412.77
NaO4' A:C1412.71
NaOP2 A:C1414.01
NaC5' A:C1414.03
NaC4' A:C1413.53
NaO5' A:C1414.75
NaC8 A:G1424.12
NaC6 A:G1423.39
NaN1 A:G1424.75
NaC5 A:G1423.47
NaN7 A:G1422.92
NaC4 A:G1424.81
NaO6 A:G1422.73
NaN4 A:C1434.37
NaO A:Hoh42393.96
NaO A:Hoh44344.90
NaO A:Hoh96322.49

interactive model:


Sodium binding site 27 out of 86 in 1n8r


Sodium binding site 27 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 27 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U170, A: C171, A: C218, A: G219, A: G221, A: A222, A: Hoh9422, A: Hoh9941, 4: Hoh8506, 4: Hoh8508,

conact list:


AtomAtomDistance (A)
NaN3 A:U1704.05
NaC2 A:U1703.72
NaN1 A:U1704.91
NaO2 A:U1702.80
NaC2' A:U1704.89
NaO2' A:U1704.96
NaC1' A:C1714.08
NaO4' A:C1713.57
NaC2' A:C1714.92
NaC4' A:C1714.25
NaO2' A:C1714.49
NaC3' A:C2183.51
NaC1' A:C2184.25
NaO3' A:C2182.95
NaO4' A:C2184.23
NaC5' A:C2184.76
NaC2' A:C2183.44
NaC4' A:C2183.58
NaO2' A:C2182.37
NaOP1 A:G2194.45
NaP A:G2194.14
NaO4' A:G2194.91
NaC5' A:G2193.63
NaC4' A:G2194.81
NaO5' A:G2194.24
NaC6 A:G2214.04
NaC5 A:G2214.69
NaN7 A:G2214.61
NaO6 A:G2212.96
NaN6 A:A2224.60
NaO A:Hoh94224.32
NaO A:Hoh99413.12
NaO 4:Hoh85063.00
NaO 4:Hoh85084.80

interactive model:


Sodium binding site 28 out of 86 in 1n8r


Sodium binding site 28 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 28 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G386, A: G387, A: G388, A: C401, A: U402, A: C403, A: Hoh5778, A: Hoh6616, A: Hoh7456, A: Hoh7600,

conact list:


AtomAtomDistance (A)
NaC6 A:G3863.90
NaN1 A:G3864.79
NaC5 A:G3864.55
NaN7 A:G3864.65
NaO6 A:G3863.10
NaC6 A:G3873.65
NaN1 A:G3874.86
NaC5 A:G3874.20
NaN7 A:G3874.01
NaO6 A:G3872.59
NaC6 A:G3884.08
NaN1 A:G3884.89
NaC5 A:G3884.76
NaN7 A:G3884.89
NaO6 A:G3883.31
NaC4 A:C4014.64
NaN4 A:C4013.63
NaN3 A:U4023.98
NaC4 A:U4023.76
NaO4 A:U4022.80
NaC4 A:C4034.93
NaN4 A:C4034.02
NaO A:Hoh57783.85
NaO A:Hoh66163.83
NaO A:Hoh74562.74
NaO A:Hoh76004.84

interactive model:


Sodium binding site 29 out of 86 in 1n8r


Sodium binding site 29 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 29 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C1894, A: G1896, A: U1897, A: G1898, A: C1899, A: G1938, A: U1939, A: A1942, A: Na8334, A: Hoh5639,

conact list:


AtomAtomDistance (A)
NaN3 A:C18944.39
NaC2 A:C18943.68
NaN1 A:C18944.61
NaC1' A:C18944.57
NaO2 A:C18942.54
NaOP2 A:G18964.91
NaN3 A:U18974.45
NaC5 A:U18973.99
NaC4 A:U18973.40
NaO4 A:U18972.46
NaC6 A:G18983.71
NaN1 A:G18984.88
NaC5 A:G18984.25
NaN7 A:G18984.08
NaO6 A:G18982.72
NaN4 A:C18994.49
NaO6 A:G19384.08
NaN3 A:U19394.05
NaC4 A:U19394.06
NaO4 A:U19393.20
NaC6 A:A19424.95
NaN6 A:A19423.92
NaNA A:Na83343.95
NaO A:Hoh56394.94

interactive model:


Sodium binding site 30 out of 86 in 1n8r


Sodium binding site 30 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 30 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C1894, A: A1895, A: G1896, A: U1897, A: A1942, A: Na8333, A: Hoh5639, A: Hoh6669,

conact list:


AtomAtomDistance (A)
NaN3 A:C18944.61
NaC2 A:C18943.70
NaN1 A:C18944.12
NaC1' A:C18943.85
NaO2 A:C18942.97
NaO4' A:C18943.18
NaC4' A:C18944.17
NaN9 A:A18954.96
NaC8 A:A18954.25
NaC6 A:A18954.37
NaC5 A:A18954.06
NaN6 A:A18954.27
NaN7 A:A18953.64
NaC4 A:A18954.87
NaN9 A:G18964.90
NaC8 A:G18963.91
NaC6 A:G18963.21
NaN1 A:G18964.58
NaC5 A:G18963.24
NaN7 A:G18962.69
NaC4 A:G18964.58
NaO6 A:G18962.60
NaN3 A:U18974.62
NaC5 A:U18974.37
NaC4 A:U18973.73
NaO4 A:U18972.96
NaN6 A:A19424.08
NaNA A:Na83333.95
NaO A:Hoh56392.29
NaO A:Hoh66693.75

interactive model:


Sodium binding site 31 out of 86 in 1n8r


Sodium binding site 31 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 31 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C621, A: G622, A: U623, A: A628, A: A629, A: A630, A: A632, Z: Leu150, A: Hoh3264, A: Hoh5815,

conact list:


AtomAtomDistance (A)
NaC6 A:C6214.78
NaC5 A:C6213.88
NaC4 A:C6214.10
NaN4 A:C6213.83
NaC8 A:G6224.27
NaC6 A:G6223.60
NaN1 A:G6224.91
NaC5 A:G6223.66
NaN7 A:G6223.13
NaC4 A:G6224.95
NaO6 A:G6222.97
NaN3 A:U6234.46
NaC5 A:U6233.82
NaC4 A:U6233.38
NaO4 A:U6232.62
NaC2' A:A6284.62
NaO2' A:A6283.26
NaOP2 A:A6294.92
NaOP1 A:A6304.08
NaP A:A6304.32
NaOP2 A:A6303.55
NaN6 A:A6323.95
NaCD1 Z:Leu1503.98
NaO A:Hoh32642.88
NaO A:Hoh58153.52

interactive model:


Sodium binding site 32 out of 86 in 1n8r


Sodium binding site 32 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 32 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1704, A: C1705, A: G1706, A: G1707, A: A1710, A: Hoh3291, A: Hoh3315, A: Hoh3751, A: Hoh3830, A: Hoh4468, A: Hoh4963, A: Hoh5727, A: Hoh7730, A: Hoh8179,

conact list:


AtomAtomDistance (A)
NaOP2 A:G17044.83
NaOP2 A:C17054.49
NaC6 A:G17063.46
NaN1 A:G17064.65
NaC5 A:G17064.02
NaN7 A:G17063.87
NaO6 A:G17062.44
NaC6 A:G17073.45
NaN1 A:G17073.76
NaC5 A:G17074.74
NaO6 A:G17072.48
NaOP2 A:A17104.15
NaO A:Hoh32914.18
NaO A:Hoh33152.79
NaO A:Hoh37514.97
NaO A:Hoh38304.58
NaO A:Hoh44683.84
NaO A:Hoh49633.97
NaO A:Hoh57272.07
NaO A:Hoh77302.46
NaO A:Hoh81792.85

interactive model:


Sodium binding site 33 out of 86 in 1n8r


Sodium binding site 33 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 33 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 33 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U2659, A: G2660, S: Lys69, S: Ser70, S: Val72, S: Asp73, S: Gly74, S: Trp75, S: Asp76, S: Na8337, A: Hoh4501, S: Hoh8516, S: Hoh8525, S: Hoh8527,

conact list:


AtomAtomDistance (A)
NaC3' A:U26593.56
NaO3' A:U26592.25
NaC5' A:U26594.41
NaC2' A:U26594.43
NaC4' A:U26593.95
NaO2' A:U26594.10
NaOP1 A:G26602.20
NaP A:G26602.75
NaOP2 A:G26603.76
NaO5' A:G26603.91
NaO S:Lys694.76
NaO S:Ser704.60
NaO S:Val722.47
NaN S:Val724.95
NaCB S:Val724.53
NaC S:Val723.53
NaCG1 S:Val724.61
NaCA S:Val724.57
NaN S:Asp734.23
NaC S:Asp734.39
NaCA S:Asp734.09
NaN S:Gly744.07
NaC S:Gly744.85
NaCA S:Gly744.96
NaN S:Trp753.94
NaC S:Trp753.60
NaCA S:Trp754.42
NaO S:Trp752.40
NaN S:Asp764.56
NaCA S:Asp764.60
NaNA S:Na83373.93
NaO A:Hoh45014.54
NaO S:Hoh85162.60
NaO S:Hoh85253.50
NaO S:Hoh85272.16

interactive model:


Sodium binding site 34 out of 86 in 1n8r


Sodium binding site 34 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 34 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 34 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2540, A: G2611, A: C2614, A: G2616, A: U2645, A: G2646, A: Mg8088, A: Hoh3419, A: Hoh4684, A: Hoh9468, A: Hoh9603, A: Hoh9692, A: Hoh9759,

conact list:


AtomAtomDistance (A)
NaC6 A:G25403.53
NaN1 A:G25403.84
NaC5 A:G25404.87
NaO6 A:G25402.51
NaN9 A:G26114.46
NaC8 A:G26114.37
NaC1' A:G26114.13
NaC2' A:G26114.18
NaO2' A:G26113.41
NaOP2 A:C26144.54
NaC6 A:G26163.90
NaN1 A:G26163.93
NaO6 A:G26163.10
NaN3 A:U26454.30
NaC2 A:U26453.45
NaN1 A:U26454.18
NaC1' A:U26454.09
NaO2 A:U26452.56
NaO3' A:U26454.79
NaC2' A:U26454.12
NaO2' A:U26453.00
NaOP2 A:G26464.67
NaMG A:Mg80883.36
NaO A:Hoh34192.86
NaO A:Hoh46842.99
NaO A:Hoh94684.94
NaO A:Hoh96034.68
NaO A:Hoh96923.19
NaO A:Hoh97594.24

interactive model:


Sodium binding site 35 out of 86 in 1n8r


Sodium binding site 35 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 35 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 35 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U1740, A: U1741, A: G2033, A: A2038, A: A2039, A: Hoh3428, A: Hoh4766, A: Hoh5747, A: Hoh6662, A: Hoh7204,

conact list:


AtomAtomDistance (A)
NaC5 A:U17404.45
NaC4 A:U17404.04
NaO4 A:U17403.04
NaC5 A:U17414.63
NaC4 A:U17414.06
NaO4 A:U17413.04
NaC3' A:G20334.72
NaC2' A:G20334.00
NaO2' A:G20332.95
NaN6 A:A20384.98
NaN6 A:A20394.73
NaO A:Hoh34283.30
NaO A:Hoh47664.88
NaO A:Hoh57473.29
NaO A:Hoh66623.43
NaO A:Hoh72042.62

interactive model:


Sodium binding site 36 out of 86 in 1n8r


Sodium binding site 36 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 36 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 36 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C663, A: G681, A: A682, A: G683, A: Mg8087, A: Hoh4414, A: Hoh5073, A: Hoh8461,

conact list:


AtomAtomDistance (A)
NaN4 A:C6634.72
NaN9 A:G6814.94
NaC3' A:G6813.74
NaC1' A:G6813.83
NaO3' A:G6812.77
NaO4' A:G6814.62
NaC2' A:G6813.54
NaC4' A:G6814.76
NaO2' A:G6812.60
NaOP1 A:A6824.85
NaP A:A6823.72
NaOP2 A:A6823.33
NaO5' A:A6824.66
NaC8 A:G6834.32
NaC6 A:G6833.58
NaN1 A:G6834.93
NaC5 A:G6833.68
NaN7 A:G6833.13
NaO6 A:G6832.86
NaMG A:Mg80874.65
NaO A:Hoh44143.30
NaO A:Hoh50734.01
NaO A:Hoh84613.48

interactive model:


Sodium binding site 37 out of 86 in 1n8r


Sodium binding site 37 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 37 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 37 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G891, A: G892, A: C893, A: Hoh3336, A: Hoh3692, A: Hoh4792, A: Hoh6012, A: Hoh6655, A: Hoh6769, A: Hoh9615,

conact list:


AtomAtomDistance (A)
NaN9 A:G8914.91
NaC8 A:G8914.21
NaC6 A:G8914.52
NaC5 A:G8914.14
NaN7 A:G8913.69
NaC4 A:G8914.88
NaO6 A:G8914.52
NaN9 A:G8924.87
NaC8 A:G8923.57
NaC6 A:G8924.48
NaC5 A:G8923.95
NaN7 A:G8922.80
NaOP2 A:G8924.98
NaO6 A:G8924.20
NaN3 A:C8934.28
NaC2 A:C8933.61
NaN1 A:C8934.23
NaC1' A:C8934.38
NaO2 A:C8932.95
NaC2' A:C8934.09
NaO2' A:C8933.00
NaO A:Hoh33364.47
NaO A:Hoh36923.33
NaO A:Hoh47923.20
NaO A:Hoh60122.74
NaO A:Hoh66553.01
NaO A:Hoh67694.40
NaO A:Hoh96154.72

interactive model:


Sodium binding site 38 out of 86 in 1n8r


Sodium binding site 38 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 38 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 38 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2662, A: U2663, A: A2811, A: A2812, A: A2816, A: G2817, A: Hoh4283, A: Hoh9621,

conact list:


AtomAtomDistance (A)
NaN2 A:G26624.47
NaN1 A:G26624.71
NaN3 A:U26634.22
NaC2 A:U26633.66
NaN1 A:U26634.80
NaC1' A:U26634.98
NaO2 A:U26632.52
NaC3' A:A28113.76
NaC1' A:A28114.43
NaO3' A:A28112.82
NaC2' A:A28113.72
NaO2' A:A28112.68
NaOP1 A:A28124.79
NaP A:A28123.69
NaOP2 A:A28123.26
NaC5' A:A28124.49
NaO5' A:A28124.61
NaC3' A:A28163.97
NaC1' A:A28164.93
NaO3' A:A28163.24
NaC2' A:A28163.49
NaO2' A:A28162.80
NaOP1 A:G28174.29
NaP A:G28173.45
NaN7 A:G28174.88
NaOP2 A:G28172.58
NaO5' A:G28174.74
NaO A:Hoh42834.68
NaO A:Hoh96212.95

interactive model:


Sodium binding site 39 out of 86 in 1n8r


Sodium binding site 39 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 39 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 39 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A914, A: C915, A: C1043, A: C1044, A: G1045, A: Hoh5973, A: Hoh6224, A: Hoh9616,

conact list:


AtomAtomDistance (A)
NaC3' A:A9143.77
NaO3' A:A9142.57
NaC2' A:A9143.90
NaC4' A:A9144.53
NaO2' A:A9143.08
NaOP1 A:C9154.38
NaP A:C9153.20
NaOP2 A:C9152.65
NaC5' A:C9154.01
NaO5' A:C9154.09
NaC3' A:C10434.38
NaO3' A:C10433.32
NaC2' A:C10434.81
NaC4' A:C10434.48
NaO2' A:C10434.00
NaC3' A:C10444.56
NaP A:C10444.10
NaO3' A:C10444.62
NaOP2 A:C10443.59
NaC5' A:C10444.23
NaC4' A:C10444.45
NaO5' A:C10444.70
NaOP1 A:G10454.65
NaP A:G10453.58
NaOP2 A:G10452.32
NaC5' A:G10453.87
NaO5' A:G10453.80
NaO A:Hoh59733.28
NaO A:Hoh62244.69
NaO A:Hoh96163.52

interactive model:


Sodium binding site 40 out of 86 in 1n8r


Sodium binding site 40 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 40 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 40 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U623, A: U624, A: C633, A: U900, A: G901, A: G2537, A: Hoh6112, A: Hoh7342, A: Hoh7574, A: Hoh8239, A: Hoh9834,

conact list:


AtomAtomDistance (A)
NaC2 A:U6234.37
NaN1 A:U6234.84
NaC1' A:U6234.22
NaO2 A:U6233.31
NaC2' A:U6233.85
NaO2' A:U6233.09
NaC6 A:U6245.00
NaN1 A:U6244.56
NaC1' A:U6243.77
NaO4' A:U6242.98
NaC5' A:U6244.41
NaC2' A:U6244.94
NaC4' A:U6243.91
NaC1' A:C6334.95
NaO2 A:C6334.44
NaO3' A:U9004.53
NaOP1 A:G9012.39
NaP A:G9013.75
NaO3' A:G9014.89
NaOP2 A:G9014.89
NaC5' A:G9013.71
NaC4' A:G9014.84
NaO5' A:G9014.09
NaO6 A:G25374.77
NaO A:Hoh61124.70
NaO A:Hoh73422.40
NaO A:Hoh75744.86
NaO A:Hoh82392.72
NaO A:Hoh98344.19

interactive model:


Sodium binding site 41 out of 86 in 1n8r


Sodium binding site 41 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 41 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 41 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A955, A: G956, B: C3081, B: U3082, A: Hoh5646, A: Hoh6703, A: Hoh6921, A: Hoh6992, B: Hoh5174,

conact list:


AtomAtomDistance (A)
NaC3' A:A9553.96
NaC1' A:A9554.84
NaO3' A:A9553.35
NaO4' A:A9554.89
NaC2' A:A9553.85
NaC4' A:A9554.14
NaO2' A:A9552.78
NaOP1 A:G9564.37
NaP A:G9564.50
NaC5' A:G9564.63
NaC3' B:C30814.61
NaO3' B:C30813.44
NaC5' B:C30814.99
NaC4' B:C30814.73
NaOP1 B:U30823.27
NaP B:U30823.99
NaOP2 B:U30824.97
NaO A:Hoh56463.43
NaO A:Hoh67034.23
NaO A:Hoh69214.98
NaO A:Hoh69922.91
NaO B:Hoh51744.12

interactive model:


Sodium binding site 42 out of 86 in 1n8r


Sodium binding site 42 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 42 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 42 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1039, A: A1040, A: U1041, A: G1295, A: A1296, M: Lys3, M: Gly14, M: Gly15, M: Arg21, A: Hoh5264, A: Hoh6974, M: Hoh8515,

conact list:


AtomAtomDistance (A)
NaO2' A:G10394.53
NaOP1 A:A10404.89
NaC3' A:A10403.82
NaC1' A:A10404.84
NaO3' A:A10403.12
NaO4' A:A10404.82
NaC2' A:A10403.85
NaC4' A:A10403.97
NaO2' A:A10402.84
NaOP1 A:U10414.24
NaP A:U10414.34
NaC5' A:U10414.55
NaO5' A:U10414.94
NaC3' A:G12954.47
NaO3' A:G12953.21
NaC5' A:G12954.86
NaC4' A:G12954.72
NaOP1 A:A12962.78
NaP A:A12963.58
NaOP2 A:A12964.68
NaC5' A:A12964.53
NaO5' A:A12964.60
NaNZ M:Lys34.73
NaO M:Gly142.85
NaC M:Gly143.85
NaCA M:Gly144.39
NaN M:Gly154.90
NaNH2 M:Arg214.20
NaO A:Hoh52642.53
NaO A:Hoh69743.97
NaO M:Hoh85152.60

interactive model:


Sodium binding site 43 out of 86 in 1n8r


Sodium binding site 43 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 43 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 43 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C162, A: U768, A: C769, A: G2111, A: A2112, A: Hoh3296, A: Hoh5205, A: Hoh7975,

conact list:


AtomAtomDistance (A)
NaC5' A:C1624.66
NaC3' A:U7684.56
NaC2 A:U7684.24
NaN1 A:U7684.76
NaC1' A:U7684.17
NaO2 A:U7683.17
NaO3' A:U7684.69
NaC2' A:U7683.27
NaO2' A:U7682.65
NaC6 A:C7694.99
NaN1 A:C7694.91
NaC1' A:C7694.09
NaO4' A:C7693.02
NaC5' A:C7693.91
NaC4' A:C7693.71
NaO5' A:C7694.75
NaC3' A:G21114.21
NaO3' A:G21113.02
NaC5' A:G21114.52
NaC4' A:G21114.35
NaO2' A:G21114.86
NaOP1 A:A21122.88
NaP A:A21123.55
NaOP2 A:A21124.53
NaC5' A:A21124.80
NaO5' A:A21124.71
NaO A:Hoh32964.90
NaO A:Hoh52052.55
NaO A:Hoh79753.83

interactive model:


Sodium binding site 44 out of 86 in 1n8r


Sodium binding site 44 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 44 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 44 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1119, A: C1243, A: U1244, K: Ile46, K: Thr47, A: Hoh3274, A: Hoh3837, A: Hoh5198,

conact list:


AtomAtomDistance (A)
NaC8 A:G11194.32
NaC6 A:G11193.42
NaN1 A:G11194.77
NaC5 A:G11193.57
NaN7 A:G11193.09
NaC4 A:G11194.93
NaO6 A:G11192.70
NaOP1 A:C12434.49
NaC3' A:C12434.43
NaC6 A:C12433.53
NaN1 A:C12434.44
NaC5 A:C12433.59
NaP A:C12433.83
NaC4 A:C12434.56
NaOP2 A:C12433.11
NaC5' A:C12434.73
NaC4' A:C12434.99
NaO5' A:C12433.54
NaC6 A:U12444.64
NaC5 A:U12444.26
NaOP2 A:U12444.33
NaCB K:Ile464.83
NaCD1 K:Ile464.44
NaC K:Ile464.88
NaCG1 K:Ile464.23
NaO K:Thr473.29
NaN K:Thr474.33
NaCB K:Thr474.76
NaC K:Thr474.24
NaCA K:Thr474.67
NaO A:Hoh32743.44
NaO A:Hoh38374.40
NaO A:Hoh51982.51

interactive model:


Sodium binding site 45 out of 86 in 1n8r


Sodium binding site 45 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 45 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 45 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C920, A: U2277, A: U2278, A: G2279, A: A2463, A: A2467, A: Hoh6916, A: Hoh7240, A: Hoh7829, A: Hoh9850,

conact list:


AtomAtomDistance (A)
NaN3 A:C9203.13
NaC2 A:C9203.70
NaN1 A:C9205.00
NaO2 A:C9203.51
NaC4 A:C9204.10
NaN4 A:C9204.24
NaO3' A:U22774.37
NaOP1 A:U22782.72
NaP A:U22783.95
NaC5' A:U22783.51
NaC4' A:U22784.69
NaO5' A:U22784.15
NaC1' A:G22794.30
NaO4' A:G22793.45
NaC5' A:G22794.66
NaC4' A:G22794.31
NaC2 A:A24634.23
NaC6 A:A24634.65
NaN1 A:A24633.63
NaN6 A:A24634.72
NaC8 A:A24674.52
NaC6 A:A24674.32
NaC5 A:A24674.17
NaN6 A:A24673.77
NaN7 A:A24673.56
NaO A:Hoh69164.58
NaO A:Hoh72403.56
NaO A:Hoh78294.99
NaO A:Hoh98502.73

interactive model:


Sodium binding site 46 out of 86 in 1n8r


Sodium binding site 46 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 46 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 46 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G941, A: U942, A: C1023, A: G1024, A: C1025, A: Hoh3130, A: Hoh4395, A: Hoh5737, A: Hoh6661, A: Hoh6862, A: Hoh7870,

conact list:


AtomAtomDistance (A)
NaC6 A:G9413.56
NaN1 A:G9414.20
NaC5 A:G9414.51
NaN7 A:G9414.92
NaO6 A:G9412.71
NaN3 A:U9423.15
NaC2 A:U9424.46
NaC5 A:U9424.48
NaO2 A:U9424.95
NaC4 A:U9423.08
NaO4 A:U9422.27
NaC5 A:C10234.55
NaC4 A:C10234.42
NaN4 A:C10233.54
NaC6 A:G10243.26
NaN1 A:G10244.40
NaC5 A:G10243.96
NaN7 A:G10243.95
NaO6 A:G10242.14
NaN3 A:C10254.53
NaC4 A:C10254.41
NaN4 A:C10253.57
NaO A:Hoh31304.32
NaO A:Hoh43953.92
NaO A:Hoh57374.64
NaO A:Hoh66612.28
NaO A:Hoh68624.93
NaO A:Hoh78704.88

interactive model:


Sodium binding site 47 out of 86 in 1n8r


Sodium binding site 47 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 47 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 47 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2094, A: U2610, A: G2611, A: A2612, D: Trp242, A: Mg8009, A: Mg8022, A: Hoh4136, A: Hoh4267, A: Hoh5077, A: Hoh7808, A: Hoh8258, A: Hoh8274, A: Hoh9701, A: Hoh9731, A: Hoh9853, A: Hoh9880,

conact list:


AtomAtomDistance (A)
NaOP1 A:G20943.64
NaP A:G20944.99
NaOP1 A:U26104.89
NaO3' A:U26104.55
NaC5' A:U26104.39
NaC4' A:U26104.99
NaOP1 A:G26112.99
NaN2 A:G26114.10
NaP A:G26113.86
NaOP2 A:G26113.89
NaOP1 A:A26124.86
NaCD2 D:Trp2424.50
NaCE3 D:Trp2423.73
NaCZ3 D:Trp2423.77
NaCH2 D:Trp2424.56
NaMG A:Mg80093.73
NaMG A:Mg80224.90
NaO A:Hoh41363.01
NaO A:Hoh42672.88
NaO A:Hoh50773.63
NaO A:Hoh78082.71
NaO A:Hoh82584.75
NaO A:Hoh82742.62
NaO A:Hoh97014.50
NaO A:Hoh97313.06
NaO A:Hoh98534.18
NaO A:Hoh98802.67

interactive model:


Sodium binding site 48 out of 86 in 1n8r


Sodium binding site 48 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 48 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 48 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G898, A: C899, A: A922, A: A923, A: G924, A: U2109, A: Hoh3577, A: Hoh6041,

conact list:


AtomAtomDistance (A)
NaN9 A:G8984.80
NaN3 A:G8983.60
NaN2 A:G8984.11
NaC3' A:G8984.85
NaC2 A:G8984.30
NaC1' A:G8984.16
NaO3' A:G8984.06
NaC4 A:G8984.57
NaC2' A:G8984.44
NaO2' A:G8983.68
NaOP1 A:C8994.77
NaOP1 A:A9222.87
NaP A:A9224.20
NaOP2 A:A9224.95
NaC5' A:A9224.55
NaO5' A:A9224.50
NaC3' A:A9234.02
NaC1' A:A9234.72
NaO3' A:A9234.39
NaC2' A:A9233.36
NaO2' A:A9232.54
NaN9 A:G9244.30
NaC8 A:G9244.36
NaC1' A:G9243.80
NaO4' A:G9242.86
NaC5' A:G9244.10
NaC4' A:G9243.86
NaO5' A:G9244.42
NaP A:U21094.74
NaOP2 A:U21093.43
NaO A:Hoh35773.74
NaO A:Hoh60413.31

interactive model:


Sodium binding site 49 out of 86 in 1n8r


Sodium binding site 49 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 49 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 49 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A453, A: U454, A: C461, A: C478, A: G479, A: Hoh3908, A: Hoh4339, A: Hoh6034, A: Hoh6344, A: Hoh6636,

conact list:


AtomAtomDistance (A)
NaN3 A:A4534.48
NaC3' A:A4534.20
NaC1' A:A4534.29
NaO3' A:A4533.29
NaC2' A:A4533.92
NaO2' A:A4532.85
NaOP1 A:U4544.66
NaP A:U4543.83
NaOP2 A:U4543.23
NaN4 A:C4614.16
NaOP1 A:C4783.06
NaC3' A:C4784.93
NaP A:C4783.63
NaO3' A:C4784.83
NaOP2 A:C4783.71
NaC5' A:C4784.51
NaO5' A:C4783.84
NaOP1 A:G4794.03
NaC8 A:G4794.71
NaP A:G4793.86
NaN7 A:G4794.72
NaOP2 A:G4792.77
NaO A:Hoh39084.67
NaO A:Hoh43393.55
NaO A:Hoh60344.85
NaO A:Hoh63442.83
NaO A:Hoh66364.11

interactive model:


Sodium binding site 50 out of 86 in 1n8r


Sodium binding site 50 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 50 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 50 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U837, A: C838, A: C839, D: Gln230, D: Gly231, D: Trp232, A: Hoh3745, A: Hoh4979, A: Hoh5294, A: Hoh5492, A: Hoh7205, A: Hoh7719, D: Hoh8526,

conact list:


AtomAtomDistance (A)
NaOP1 A:U8373.19
NaP A:U8373.97
NaOP2 A:U8373.82
NaO5' A:U8374.85
NaOP2 A:C8384.15
NaN4 A:C8394.57
NaO D:Gln2303.14
NaC D:Gln2304.24
NaN D:Gly2314.65
NaCA D:Gly2314.06
NaCE3 D:Trp2324.90
NaCZ3 D:Trp2324.01
NaCH2 D:Trp2324.20
NaO A:Hoh37454.97
NaO A:Hoh49792.87
NaO A:Hoh52942.59
NaO A:Hoh54923.11
NaO A:Hoh72053.51
NaO A:Hoh77192.55
NaO D:Hoh85264.76

interactive model:


Sodium binding site 51 out of 86 in 1n8r


Sodium binding site 51 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 51 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 51 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A167, A: C168, A: U2109, A: G2110, A: G2111, A: U2277, A: Hoh3896, A: Hoh4822, A: Hoh5698, A: Hoh9486,

conact list:


AtomAtomDistance (A)
NaC3' A:A1674.05
NaO3' A:A1672.96
NaC2' A:A1674.26
NaC4' A:A1674.48
NaO2' A:A1673.39
NaOP1 A:C1683.18
NaP A:C1683.73
NaOP2 A:C1684.95
NaC5' A:C1684.40
NaO5' A:C1684.57
NaO3' A:U21094.69
NaOP1 A:G21103.37
NaP A:G21103.36
NaO3' A:G21104.23
NaOP2 A:G21102.50
NaO5' A:G21104.24
NaOP1 A:G21113.45
NaP A:G21114.11
NaOP2 A:G21114.21
NaOP1 A:U22773.07
NaP A:U22774.30
NaOP2 A:U22774.63
NaO A:Hoh38964.80
NaO A:Hoh48223.84
NaO A:Hoh56983.01
NaO A:Hoh94863.98

interactive model:


Sodium binding site 52 out of 86 in 1n8r


Sodium binding site 52 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 52 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 52 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U1359, A: C1360, E: Gly66, A: Hoh3090, A: Hoh3866, A: Hoh6209, A: Hoh7430, A: Hoh9573, A: Hoh9611,

conact list:


AtomAtomDistance (A)
NaC3' A:U13594.76
NaO3' A:U13594.19
NaC2' A:U13594.13
NaO2' A:U13593.69
NaOP1 A:C13602.56
NaP A:C13603.84
NaOP2 A:C13604.69
NaO E:Gly663.57
NaC E:Gly664.78
NaO A:Hoh30903.46
NaO A:Hoh38663.42
NaO A:Hoh62094.32
NaO A:Hoh74303.14
NaO A:Hoh95734.02
NaO A:Hoh96114.39

interactive model:


Sodium binding site 53 out of 86 in 1n8r


Sodium binding site 53 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 53 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 53 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G636, A: C1366, A: A1367, A: C2056, A: U2057, A: G2058, A: Hoh3209, A: Hoh5422, A: Hoh5987, A: Hoh6514, A: Hoh9986,

conact list:


AtomAtomDistance (A)
NaN9 A:G6364.86
NaC8 A:G6364.07
NaC6 A:G6363.92
NaN1 A:G6364.98
NaC5 A:G6363.71
NaN7 A:G6363.28
NaC4 A:G6364.68
NaO6 A:G6363.76
NaN4 A:C13664.28
NaN6 A:A13674.36
NaOP2 A:C20564.93
NaN3 A:U20574.46
NaC5 A:U20574.03
NaC4 A:U20573.53
NaO4 A:U20572.79
NaC6 A:G20583.91
NaC5 A:G20584.44
NaN7 A:G20584.19
NaO6 A:G20582.86
NaO A:Hoh32092.68
NaO A:Hoh54223.74
NaO A:Hoh59873.78
NaO A:Hoh65144.84
NaO A:Hoh99862.40

interactive model:


Sodium binding site 54 out of 86 in 1n8r


Sodium binding site 54 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 54 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 54 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G390, A: U391, A: U392, A: U398, A: C399, N: Lys193, N: Ala194,

conact list:


AtomAtomDistance (A)
NaN2 A:G3904.23
NaC2 A:U3914.40
NaN1 A:U3914.78
NaC1' A:U3914.05
NaO2 A:U3913.35
NaC2' A:U3913.72
NaO2' A:U3913.06
NaN1 A:U3924.70
NaC1' A:U3923.90
NaO4' A:U3923.15
NaC5' A:U3924.64
NaC4' A:U3924.14
NaN3 A:U3984.63
NaC2 A:U3984.30
NaO2 A:U3983.27
NaN3 A:C3994.67
NaC2 A:C3993.84
NaN1 A:C3994.30
NaC1' A:C3994.11
NaO2 A:C3993.16
NaO4' A:C3994.91
NaO N:Lys1932.65
NaC N:Lys1933.41
NaCA N:Lys1934.75
NaO N:Ala1943.49
NaN N:Ala1943.57
NaC N:Ala1943.53
NaCB N:Ala1943.86
NaCA N:Ala1942.92

interactive model:


Sodium binding site 55 out of 86 in 1n8r


Sodium binding site 55 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 55 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 55 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G543, A: G544, A: G545, A: C546, A: G610, A: U611, A: U612, A: Hoh3046, A: Hoh3258, A: Hoh3276, A: Hoh4217, A: Hoh4278, A: Hoh4603,

conact list:


AtomAtomDistance (A)
NaO6 A:G5435.00
NaC6 A:G5443.87
NaN1 A:G5444.84
NaC5 A:G5444.55
NaN7 A:G5444.60
NaO6 A:G5442.93
NaC6 A:G5453.59
NaN1 A:G5454.73
NaC5 A:G5454.24
NaN7 A:G5454.17
NaO6 A:G5452.52
NaN4 A:C5464.23
NaC6 A:G6104.52
NaO6 A:G6103.60
NaN3 A:U6113.68
NaC2 A:U6114.90
NaC4 A:U6113.80
NaO4 A:U6113.06
NaN3 A:U6124.08
NaC4 A:U6124.22
NaO4 A:U6123.67
NaO A:Hoh30464.52
NaO A:Hoh32583.25
NaO A:Hoh32763.05
NaO A:Hoh42172.79
NaO A:Hoh42782.69
NaO A:Hoh46033.10

interactive model:


Sodium binding site 56 out of 86 in 1n8r


Sodium binding site 56 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 56 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 56 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G464, A: G475, A: A476, E: Arg55, A: Hoh3221, A: Hoh4993, A: Hoh5814, E: Hoh8341, E: Hoh8388,

conact list:


AtomAtomDistance (A)
NaC6 A:G4643.55
NaN1 A:G4644.08
NaC5 A:G4644.76
NaO6 A:G4642.44
NaOP1 A:G4754.27
NaP A:G4753.84
NaN7 A:G4755.00
NaOP2 A:G4752.64
NaO5' A:G4754.39
NaOP2 A:A4764.28
NaO E:Arg553.34
NaCB E:Arg554.66
NaC E:Arg554.39
NaO A:Hoh32212.60
NaO A:Hoh49932.84
NaO A:Hoh58144.47
NaO E:Hoh83414.90
NaO E:Hoh83882.96

interactive model:


Sodium binding site 57 out of 86 in 1n8r


Sodium binding site 57 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 57 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 57 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A796, A: A797, A: G798, A: C799, A: G814, A: U815, A: G816, A: Hoh3583, A: Hoh3749, A: Hoh4282,

conact list:


AtomAtomDistance (A)
NaOP2 A:A7964.97
NaOP2 A:A7974.89
NaC6 A:G7983.95
NaC5 A:G7984.71
NaN7 A:G7984.68
NaO6 A:G7982.76
NaN3 A:C7994.84
NaC4 A:C7994.56
NaN4 A:C7993.67
NaC6 A:G8143.64
NaN1 A:G8144.47
NaC5 A:G8144.41
NaN7 A:G8144.62
NaO6 A:G8142.78
NaN3 A:U8153.20
NaC2 A:U8154.46
NaC5 A:U8154.44
NaO2 A:U8154.99
NaC4 A:U8153.09
NaO4 A:U8152.29
NaN3 A:G8164.82
NaN2 A:G8164.15
NaC2 A:G8164.14
NaC6 A:G8164.62
NaN1 A:G8164.01
NaO6 A:G8164.98
NaO A:Hoh35834.28
NaO A:Hoh37493.79
NaO A:Hoh42822.77

interactive model:


Sodium binding site 58 out of 86 in 1n8r


Sodium binding site 58 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 58 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 58 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U1831, A: G1832, A: A2022, A: Hoh4170, A: Hoh4497, A: Hoh5558, A: Hoh6948, A: Hoh6980, A: Hoh9506, A: Hoh9735,

conact list:


AtomAtomDistance (A)
NaOP1 A:U18314.75
NaO3' A:U18314.98
NaOP2 A:U18314.81
NaOP1 A:G18324.67
NaP A:G18323.91
NaN7 A:G18324.82
NaOP2 A:G18322.49
NaO5' A:G18324.55
NaOP1 A:A20223.74
NaP A:A20224.80
NaO A:Hoh41703.99
NaO A:Hoh44972.10
NaO A:Hoh55583.49
NaO A:Hoh69484.16
NaO A:Hoh69803.55
NaO A:Hoh95062.68
NaO A:Hoh97354.37

interactive model:


Sodium binding site 59 out of 86 in 1n8r


Sodium binding site 59 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 59 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 59 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2491, A: U2492, A: C2493, A: U2528, A: G2529, A: C2530, A: Hoh3020, A: Hoh3548, A: Hoh3936,

conact list:


AtomAtomDistance (A)
NaC6 A:G24914.83
NaO6 A:G24913.67
NaN3 A:U24924.39
NaC4 A:U24924.17
NaO4 A:U24923.16
NaC4 A:C24934.94
NaN4 A:C24934.05
NaC4 A:U25284.65
NaO4 A:U25283.86
NaC6 A:G25294.21
NaC5 A:G25294.83
NaN7 A:G25294.65
NaO6 A:G25293.08
NaN4 A:C25304.08
NaO A:Hoh30203.10
NaO A:Hoh35483.81
NaO A:Hoh39364.03

interactive model:


Sodium binding site 60 out of 86 in 1n8r


Sodium binding site 60 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 60 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 60 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G918, A: U919, A: G921, A: A922, A: G924, A: C925, A: Hoh3568, A: Hoh7682, A: Hoh9670,

conact list:


AtomAtomDistance (A)
NaO6 A:G9183.99
NaN3 A:U9193.91
NaC4 A:U9193.77
NaO4 A:U9192.83
NaC1' A:G9214.91
NaC2' A:G9214.69
NaO2' A:G9213.37
NaN9 A:A9224.92
NaN3 A:A9223.81
NaC2 A:A9224.49
NaC1' A:A9224.40
NaO4' A:A9224.03
NaC4 A:A9224.66
NaC4' A:A9224.73
NaC6 A:G9244.05
NaC5 A:G9244.63
NaN7 A:G9244.42
NaO6 A:G9242.96
NaN4 A:C9254.66
NaO A:Hoh35683.99
NaO A:Hoh76824.27
NaO A:Hoh96702.97

interactive model:


Sodium binding site 61 out of 86 in 1n8r


Sodium binding site 61 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 61 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 61 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1576, A: U1577, A: C1578, A: G1618, A: G1619, A: C1620, A: Hoh3102, A: Hoh3647, A: Hoh4075, A: Hoh7685,

conact list:


AtomAtomDistance (A)
NaC6 A:G15763.84
NaN1 A:G15764.66
NaC5 A:G15764.75
NaN7 A:G15764.99
NaO6 A:G15762.81
NaN3 A:U15773.62
NaC2 A:U15774.87
NaC5 A:U15774.83
NaC4 A:U15773.51
NaO4 A:U15772.70
NaC4 A:C15784.78
NaN4 A:C15783.93
NaC6 A:G16183.61
NaN1 A:G16184.50
NaC5 A:G16184.37
NaN7 A:G16184.54
NaO6 A:G16182.69
NaC6 A:G16193.62
NaN1 A:G16194.76
NaC5 A:G16194.31
NaN7 A:G16194.24
NaO6 A:G16192.48
NaN3 A:C16204.83
NaC4 A:C16204.67
NaN4 A:C16203.84
NaO A:Hoh31024.23
NaO A:Hoh36473.63
NaO A:Hoh40752.56
NaO A:Hoh76853.29

interactive model:


Sodium binding site 62 out of 86 in 1n8r


Sodium binding site 62 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 62 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 62 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A194, A: C195, A: G196, A: A415, A: G416, A: G426, A: Hoh3288, A: Hoh4679,

conact list:


AtomAtomDistance (A)
NaP A:A1944.94
NaOP2 A:A1944.13
NaO5' A:A1944.86
NaC6 A:C1954.50
NaC5 A:C1954.19
NaP A:C1954.71
NaOP2 A:C1953.43
NaO5' A:C1954.77
NaC8 A:G1964.08
NaC6 A:G1963.66
NaC5 A:G1963.62
NaN7 A:G1962.92
NaC4 A:G1964.93
NaO6 A:G1963.04
NaN9 A:A4154.73
NaN3 A:A4153.43
NaC2 A:A4154.20
NaC1' A:A4154.10
NaC4 A:A4154.45
NaC2' A:A4153.75
NaO2' A:A4153.12
NaN9 A:G4164.60
NaC1' A:G4163.93
NaO4' A:G4163.09
NaC5' A:G4164.47
NaC4' A:G4164.01
NaN3 A:G4264.74
NaN2 A:G4264.96
NaO A:Hoh32883.16
NaO A:Hoh46793.86

interactive model:


Sodium binding site 63 out of 86 in 1n8r


Sodium binding site 63 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 63 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 63 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G868, A: G869, A: A886, A: G887, N: Lys79, A: Hoh3502, A: Hoh4060, A: Hoh4299, A: Hoh5540, A: Hoh5613, A: Hoh9661, A: Hoh9752, A: Hoh9925,

conact list:


AtomAtomDistance (A)
NaC3' A:G8684.35
NaC1' A:G8684.79
NaO3' A:G8683.09
NaC2' A:G8684.54
NaO2' A:G8683.84
NaN9 A:G8694.58
NaOP1 A:G8694.70
NaC8 A:G8693.24
NaC5 A:G8694.22
NaP A:G8693.48
NaN7 A:G8692.92
NaOP2 A:G8692.69
NaO5' A:G8694.36
NaO3' A:A8864.48
NaC2' A:A8864.50
NaO2' A:A8863.16
NaP A:G8874.63
NaOP2 A:G8873.52
NaNZ N:Lys794.12
NaO A:Hoh35023.87
NaO A:Hoh40604.94
NaO A:Hoh42992.34
NaO A:Hoh55403.41
NaO A:Hoh56133.81
NaO A:Hoh96614.02
NaO A:Hoh97524.16
NaO A:Hoh99254.56

interactive model:


Sodium binding site 64 out of 86 in 1n8r


Sodium binding site 64 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 64 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 64 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A632, A: C633, A: U2535, A: C2536, A: G2537, A: A2538, A: U2539, A: Hoh3489, A: Hoh4042, A: Hoh5244, A: Hoh7613,

conact list:


AtomAtomDistance (A)
NaC3' A:A6324.56
NaO3' A:A6323.20
NaC4' A:A6324.85
NaO2' A:A6324.88
NaOP1 A:C6332.25
NaP A:C6333.29
NaOP2 A:C6334.49
NaC5' A:C6334.09
NaO5' A:C6334.17
NaC3' A:U25354.86
NaO3' A:U25353.59
NaO2' A:U25354.20
NaOP1 A:C25363.24
NaP A:C25363.99
NaC5' A:C25364.11
NaO5' A:C25364.56
NaC3' A:G25374.89
NaO3' A:G25374.85
NaOP1 A:A25383.09
NaC3' A:A25384.77
NaP A:A25383.70
NaOP2 A:A25384.70
NaC5' A:A25384.21
NaC4' A:A25384.41
NaO5' A:A25383.05
NaOP1 A:U25394.57
NaP A:U25394.36
NaOP2 A:U25393.26
NaO A:Hoh34893.71
NaO A:Hoh40422.91
NaO A:Hoh52442.48
NaO A:Hoh76134.90

interactive model:


Sodium binding site 65 out of 86 in 1n8r


Sodium binding site 65 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 65 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 65 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C910, A: G911, A: U1293, A: A1294, A: G1295, A: Hoh5749, A: Hoh6731,

conact list:


AtomAtomDistance (A)
NaN4 A:C9104.75
NaN2 A:G9113.33
NaC2 A:G9113.94
NaC6 A:G9114.99
NaN1 A:G9113.90
NaOP1 A:U12933.54
NaP A:U12933.56
NaOP2 A:U12932.78
NaO5' A:U12934.23
NaP A:A12944.81
NaOP2 A:A12943.35
NaC8 A:G12954.96
NaC6 A:G12953.93
NaC5 A:G12954.20
NaN7 A:G12953.75
NaO6 A:G12953.07
NaO A:Hoh57494.61
NaO A:Hoh67312.17

interactive model:


Sodium binding site 66 out of 86 in 1n8r


Sodium binding site 66 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 66 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 66 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C762, A: G902, A: U903, M: Thr12, M: Ser17, M: His18, M: Lys19, M: Asn20, M: Arg21, A: Hoh3598, A: Hoh3608, M: Hoh8533, M: Hoh8555,

conact list:


AtomAtomDistance (A)
NaN3 A:C7624.93
NaC4 A:C7624.40
NaN4 A:C7623.33
NaC6 A:G9023.98
NaN1 A:G9024.70
NaC5 A:G9024.98
NaO6 A:G9022.90
NaN3 A:U9033.80
NaC5 A:U9034.71
NaC4 A:U9033.49
NaO4 A:U9032.72
NaCG2 M:Thr124.91
NaO M:Ser174.03
NaC M:Ser174.64
NaO M:His182.93
NaN M:His184.42
NaCB M:His183.90
NaC M:His183.38
NaCG M:His184.83
NaCA M:His183.26
NaN M:Lys194.55
NaN M:Asn204.59
NaO M:Arg214.70
NaN M:Arg214.14
NaCB M:Arg214.22
NaCG M:Arg214.87
NaCA M:Arg214.64
NaO A:Hoh35982.87
NaO A:Hoh36083.80
NaO M:Hoh85332.76
NaO M:Hoh85552.62

interactive model:


Sodium binding site 67 out of 86 in 1n8r


Sodium binding site 67 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 67 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 67 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U831, A: U832, A: G833, A: G834, A: C848, A: C849, A: U850, A: Hoh4109, A: Hoh4816, A: Hoh5593, A: Hoh5721, A: Hoh7421, A: Hoh9756,

conact list:


AtomAtomDistance (A)
NaN3 A:U8314.25
NaC2 A:U8313.90
NaN1 A:U8314.90
NaO2 A:U8313.19
NaO2' A:U8314.36
NaC5 A:U8324.44
NaC4 A:U8324.08
NaO4 A:U8323.25
NaC6 A:G8334.52
NaO6 A:G8333.31
NaO6 A:G8344.98
NaN4 A:C8484.79
NaN4 A:C8493.78
NaN3 A:U8504.56
NaC4 A:U8504.66
NaO4 A:U8504.00
NaO A:Hoh41092.66
NaO A:Hoh48162.43
NaO A:Hoh55934.34
NaO A:Hoh57214.21
NaO A:Hoh74213.49
NaO A:Hoh97563.79

interactive model:


Sodium binding site 68 out of 86 in 1n8r


Sodium binding site 68 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 68 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 68 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2584, A: G2585, A: U2586, A: U2587, A: G2592, A: C2593, A: Hoh4086, A: Hoh7458, A: Hoh9686, A: Hoh9727,

conact list:


AtomAtomDistance (A)
NaO6 A:G25844.80
NaC6 A:G25853.79
NaN1 A:G25854.53
NaC5 A:G25854.53
NaN7 A:G25854.80
NaO6 A:G25853.03
NaN3 A:U25864.87
NaC5 A:U25864.14
NaC4 A:U25863.66
NaO4 A:U25862.61
NaN3 A:U25874.41
NaC4 A:U25874.33
NaO4 A:U25873.52
NaC6 A:G25923.65
NaN1 A:G25923.99
NaC5 A:G25924.96
NaO6 A:G25922.61
NaN3 A:C25935.00
NaC4 A:C25934.80
NaN4 A:C25933.88
NaO A:Hoh40862.41
NaO A:Hoh74582.70
NaO A:Hoh96863.67
NaO A:Hoh97272.34

interactive model:


Sodium binding site 69 out of 86 in 1n8r


Sodium binding site 69 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 69 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 69 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2772, A: G2773, A: U2774, A: A2799, A: A2801, A: C2802, A: Hoh4759,

conact list:


AtomAtomDistance (A)
NaC6 A:G27723.64
NaN1 A:G27724.66
NaC5 A:G27724.16
NaN7 A:G27724.13
NaO6 A:G27722.87
NaC6 A:G27733.47
NaN1 A:G27734.66
NaC5 A:G27734.00
NaN7 A:G27733.84
NaO6 A:G27732.47
NaC5 A:U27745.00
NaC4 A:U27744.91
NaO4 A:U27744.77
NaOP2 A:A27994.39
NaN6 A:A28014.26
NaN4 A:C28024.84
NaO A:Hoh47593.03

interactive model:


Sodium binding site 70 out of 86 in 1n8r


Sodium binding site 70 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 70 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 70 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C197, A: G229, A: C230, A: Hoh5409, A: Hoh5642, A: Hoh6960,

conact list:


AtomAtomDistance (A)
NaN3 A:C1972.42
NaC2 A:C1973.15
NaN1 A:C1974.53
NaC5 A:C1974.76
NaO2 A:C1973.07
NaC4 A:C1973.44
NaN4 A:C1973.60
NaO2' A:G2294.43
NaC5' A:C2304.63
NaC4' A:C2304.94
NaO A:Hoh54093.21
NaO A:Hoh56423.18
NaO A:Hoh69603.82

interactive model:


Sodium binding site 71 out of 86 in 1n8r


Sodium binding site 71 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 71 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 71 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G1076, A: G1077, A: A1078, A: A1079, A: C1080, A: Hoh5587, A: Hoh8172,

conact list:


AtomAtomDistance (A)
NaN7 A:G10764.52
NaN9 A:G10774.68
NaC8 A:G10773.54
NaC6 A:G10773.69
NaC5 A:G10773.39
NaN7 A:G10772.51
NaC4 A:G10774.61
NaO6 A:G10773.31
NaO3' A:A10784.64
NaOP1 A:A10792.19
NaP A:A10793.40
NaOP2 A:A10794.11
NaC5' A:A10794.29
NaO5' A:A10793.79
NaC5 A:C10804.77
NaOP2 A:C10803.80
NaO A:Hoh55874.45
NaO A:Hoh81722.51

interactive model:


Sodium binding site 72 out of 86 in 1n8r


Sodium binding site 72 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 72 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 72 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: C3040, F: Arg51, F: Lys53, B: Hoh1982,

conact list:


AtomAtomDistance (A)
NaN3 B:C30402.21
NaC2 B:C30402.90
NaC6 B:C30404.93
NaN1 B:C30404.27
NaC5 B:C30404.56
NaO2 B:C30402.83
NaC4 B:C30403.26
NaN4 B:C30403.49
NaCB F:Arg514.56
NaCG F:Arg514.33
NaCE F:Lys533.94
NaNZ F:Lys534.45
NaO B:Hoh19822.84

interactive model:


Sodium binding site 73 out of 86 in 1n8r


Sodium binding site 73 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 73 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 73 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: G3021, B: G3022, B: U3055, B: A3056, B: A3057, B: G3058, B: C3059, B: Mg8095, B: Hoh3535, B: Hoh7361,

conact list:


AtomAtomDistance (A)
NaC6 B:G30213.73
NaN1 B:G30214.09
NaC5 B:G30214.83
NaO6 B:G30212.96
NaC6 B:G30224.60
NaO6 B:G30223.39
NaC2 B:U30554.40
NaN1 B:U30554.89
NaC1' B:U30554.33
NaO2 B:U30553.40
NaO3' B:U30554.34
NaC2' B:U30554.97
NaO2' B:U30554.47
NaOP2 B:A30564.99
NaN3 B:A30573.71
NaC2 B:A30572.86
NaC6 B:A30574.40
NaN1 B:A30573.26
NaC4 B:A30574.68
NaOP2 B:A30574.19
NaC5' B:A30574.67
NaC8 B:G30584.54
NaC6 B:G30584.51
NaC5 B:G30584.37
NaN7 B:G30583.54
NaO6 B:G30583.93
NaN3 B:C30594.80
NaC4 B:C30594.68
NaN4 B:C30594.15
NaMG B:Mg80954.42
NaO B:Hoh35353.98
NaO B:Hoh73612.33

interactive model:


Sodium binding site 74 out of 86 in 1n8r


Sodium binding site 74 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 74 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 74 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A2633, C: Val192, C: Phe201, C: Gly202, C: Gly203, C: Gly204, C: Arg206, C: His208, C: Pro209, C: Gly210, C: Hoh8561, C: Hoh8594, C: Hoh8608,

conact list:


AtomAtomDistance (A)
NaOP1 A:A26333.42
NaP A:A26334.82
NaCG2 C:Val1924.63
NaCG1 C:Val1924.74
NaCA C:Val1924.92
NaO C:Phe2012.16
NaCB C:Phe2014.89
NaC C:Phe2013.29
NaCA C:Phe2014.27
NaO C:Gly2023.25
NaN C:Gly2024.11
NaC C:Gly2023.59
NaCA C:Gly2024.13
NaO C:Gly2033.11
NaN C:Gly2034.16
NaC C:Gly2033.88
NaCA C:Gly2034.48
NaN C:Gly2044.74
NaO C:Arg2064.97
NaO C:His2082.38
NaN C:His2084.30
NaCD2 C:His2084.69
NaC C:His2083.57
NaCG C:His2084.96
NaCA C:His2084.60
NaO C:Pro2094.90
NaN C:Pro2094.34
NaC C:Pro2094.19
NaCA C:Pro2094.13
NaN C:Gly2104.02
NaCA C:Gly2104.74
NaO C:Hoh85612.19
NaO C:Hoh85944.26
NaO C:Hoh86082.04

interactive model:


Sodium binding site 75 out of 86 in 1n8r


Sodium binding site 75 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 75 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 75 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Asp45, E: Thr94, E: Glu95, E: Lys96, E: Asp97, E: Arg98, E: Hoh8310, E: Hoh8401, E: Hoh8429,

conact list:


AtomAtomDistance (A)
NaCB E:Asp454.12
NaOD2 E:Asp453.00
NaOD1 E:Asp452.11
NaCG E:Asp452.81
NaO E:Thr942.94
NaC E:Thr944.14
NaO E:Glu953.75
NaN E:Glu954.81
NaC E:Glu953.98
NaCA E:Glu954.57
NaO E:Lys962.57
NaN E:Lys964.39
NaC E:Lys963.63
NaCA E:Lys964.60
NaN E:Asp974.37
NaCA E:Asp974.32
NaN E:Arg984.84
NaO E:Hoh83102.93
NaO E:Hoh84014.39
NaO E:Hoh84294.66

interactive model:


Sodium binding site 76 out of 86 in 1n8r


Sodium binding site 76 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 76 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 76 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A1133, A: G1134, A: G2520, J: Lys150, J: Met151, J: Val153, J: Thr154, J: Pro155, J: Thr156,

conact list:


AtomAtomDistance (A)
NaC3' A:A11334.06
NaO3' A:A11333.01
NaC2' A:A11334.23
NaC4' A:A11334.45
NaO2' A:A11333.30
NaOP1 A:G11343.26
NaP A:G11343.82
NaOP2 A:G11344.92
NaC5' A:G11344.65
NaO5' A:G11344.76
NaO2' A:G25204.23
NaO J:Lys1502.82
NaC J:Lys1504.04
NaCA J:Lys1504.98
NaO J:Met1514.96
NaN J:Met1514.94
NaC J:Met1514.95
NaCA J:Met1514.97
NaO J:Val1532.51
NaN J:Val1534.64
NaCG2 J:Val1534.73
NaC J:Val1533.72
NaCA J:Val1534.80
NaO J:Thr1543.25
NaN J:Thr1544.46
NaC J:Thr1543.59
NaCA J:Thr1544.32
NaO J:Pro1552.42
NaN J:Pro1554.00
NaCD J:Pro1554.90
NaC J:Pro1553.38
NaCA J:Pro1554.17
NaN J:Thr1564.27
NaCA J:Thr1564.49

interactive model:


Sodium binding site 77 out of 86 in 1n8r


Sodium binding site 77 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 77 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 77 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2286, A: C2287, A: G2288, J: Asp109, J: Arg112, A: Hoh5168, J: Hoh8345,

conact list:


AtomAtomDistance (A)
NaO6 A:G22864.57
NaN3 A:C22874.44
NaC4 A:C22874.65
NaN4 A:C22873.81
NaN3 A:G22884.61
NaN2 A:G22884.42
NaC2 A:G22884.42
NaN1 A:G22884.82
NaN J:Asp1093.51
NaCB J:Asp1094.99
NaCA J:Asp1094.39
NaCD J:Arg1123.53
NaCZ J:Arg1124.21
NaCG J:Arg1124.70
NaNE J:Arg1124.31
NaNH1 J:Arg1123.23
NaO A:Hoh51684.70
NaO J:Hoh83453.30

interactive model:


Sodium binding site 78 out of 86 in 1n8r


Sodium binding site 78 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 78 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 78 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A2677, K: Arg60, K: Val61, K: Asp62, K: Ile63, K: Gly64, K: Tyr69, K: Phe70, K: Tyr71, K: Cl8521, A: Hoh6145, A: Hoh9879,

conact list:


AtomAtomDistance (A)
NaOP1 A:A26774.00
NaO K:Arg603.04
NaC K:Arg604.11
NaO K:Val612.65
NaN K:Val614.49
NaC K:Val613.43
NaCA K:Val613.81
NaN K:Asp624.48
NaC K:Asp624.61
NaCA K:Asp624.97
NaO K:Ile632.67
NaN K:Ile634.31
NaCB K:Ile634.79
NaC K:Ile633.85
NaCA K:Ile634.57
NaN K:Gly644.86
NaCA K:Gly644.95
NaO K:Tyr692.35
NaN K:Tyr694.93
NaCB K:Tyr694.02
NaCD2 K:Tyr694.00
NaC K:Tyr693.56
NaCG K:Tyr694.50
NaCA K:Tyr694.40
NaN K:Phe704.53
NaC K:Phe704.65
NaCA K:Phe704.62
NaN K:Tyr713.87
NaCB K:Tyr714.13
NaCA K:Tyr714.62
NaCL K:Cl85214.86
NaO A:Hoh61452.58
NaO A:Hoh98792.37

interactive model:


Sodium binding site 79 out of 86 in 1n8r


Sodium binding site 79 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 79 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 79 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: M: Arg27, M: Gly28, M: Gly29, M: Gly31, M: Asp32, M: Ala33, M: Gly34, M: Glu39, A: Hoh4051, M: Hoh8516, M: Hoh8521, M: Hoh8542, M: Hoh8594,

conact list:


AtomAtomDistance (A)
NaO M:Arg273.26
NaC M:Arg274.39
NaO M:Gly283.42
NaN M:Gly285.00
NaC M:Gly283.85
NaCA M:Gly284.63
NaO M:Gly293.55
NaN M:Gly294.26
NaC M:Gly294.08
NaCA M:Gly294.28
NaO M:Gly313.16
NaC M:Gly314.32
NaO M:Asp324.68
NaN M:Asp324.97
NaC M:Asp324.18
NaCA M:Asp324.67
NaO M:Ala332.76
NaN M:Ala333.76
NaC M:Ala333.69
NaCB M:Ala333.91
NaCA M:Ala333.97
NaN M:Gly344.90
NaOE1 M:Glu392.41
NaCB M:Glu394.98
NaOE2 M:Glu393.55
NaCD M:Glu393.16
NaCG M:Glu394.29
NaO A:Hoh40514.15
NaO M:Hoh85163.21
NaO M:Hoh85213.90
NaO M:Hoh85424.31
NaO M:Hoh85941.99

interactive model:


Sodium binding site 80 out of 86 in 1n8r


Sodium binding site 80 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 80 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 80 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: N: Asn106, N: Phe109, N: Pro110, N: Asn111, N: Leu112, N: Arg113, N: Leu157, N: Hoh8529, N: Hoh8562, N: Hoh8633,

conact list:


AtomAtomDistance (A)
NaO N:Asn1063.11
NaCB N:Asn1064.57
NaND2 N:Asn1063.42
NaC N:Asn1064.07
NaOD1 N:Asn1062.89
NaCG N:Asn1063.37
NaCA N:Asn1064.58
NaO N:Phe1092.64
NaN N:Phe1094.97
NaCB N:Phe1094.91
NaC N:Phe1093.31
NaCA N:Phe1094.57
NaO N:Pro1102.66
NaN N:Pro1103.53
NaCB N:Pro1104.58
NaCD N:Pro1104.97
NaC N:Pro1102.89
NaCA N:Pro1103.11
NaO N:Asn1114.84
NaN N:Asn1113.74
NaC N:Asn1114.06
NaCA N:Asn1114.38
NaO N:Leu1122.27
NaN N:Leu1123.45
NaCB N:Leu1124.64
NaC N:Leu1123.36
NaCA N:Leu1123.91
NaN N:Arg1134.53
NaCA N:Arg1134.95
NaCD2 N:Leu1574.97
NaO N:Hoh85295.00
NaO N:Hoh85624.30
NaO N:Hoh86332.72

interactive model:


Sodium binding site 81 out of 86 in 1n8r


Sodium binding site 81 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 81 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 81 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: C2366, R: Asn16, R: Asp20, R: Arg21, R: Gly22, R: Thr23, R: Ser24, R: Arg28, R: Asp44, R: Ser46, R: Hoh1795, R: Hoh5427, R: Hoh7505,

conact list:


AtomAtomDistance (A)
NaOP1 A:C23664.99
NaOD1 R:Asn164.13
NaO R:Asp202.61
NaCB R:Asp204.82
NaC R:Asp203.78
NaCA R:Asp204.63
NaO R:Arg214.28
NaN R:Arg214.73
NaC R:Arg214.33
NaCA R:Arg214.86
NaO R:Gly222.64
NaN R:Gly224.53
NaC R:Gly223.85
NaCA R:Gly224.75
NaO R:Thr233.85
NaN R:Thr234.76
NaC R:Thr233.92
NaCA R:Thr234.80
NaN R:Ser243.93
NaCB R:Ser243.70
NaOG R:Ser242.83
NaCA R:Ser243.77
NaNH2 R:Arg284.48
NaOD1 R:Asp444.53
NaCB R:Ser463.74
NaOG R:Ser462.98
NaO R:Hoh17952.73
NaO R:Hoh54272.24
NaO R:Hoh75053.30

interactive model:


Sodium binding site 82 out of 86 in 1n8r


Sodium binding site 82 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 82 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 82 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: G2660, A: U2830, S: Ser70, S: Lys71, S: Val72, S: Asp73, A: Na8338, A: Hoh3467, A: Hoh6306, A: Hoh7371, S: Hoh8525, S: Hoh8527,

conact list:


AtomAtomDistance (A)
NaOP1 A:G26604.50
NaO2' A:U28304.58
NaO S:Ser702.56
NaC S:Ser703.76
NaCA S:Ser704.87
NaO S:Lys713.93
NaN S:Lys714.46
NaC S:Lys713.83
NaCA S:Lys714.18
NaO S:Val722.79
NaN S:Val724.09
NaC S:Val723.51
NaCA S:Val724.47
NaN S:Asp734.03
NaCB S:Asp734.23
NaOD1 S:Asp734.00
NaCG S:Asp734.59
NaCA S:Asp733.92
NaNA A:Na83383.93
NaO A:Hoh34673.92
NaO A:Hoh63062.22
NaO A:Hoh73713.55
NaO S:Hoh85252.57
NaO S:Hoh85272.82

interactive model:


Sodium binding site 83 out of 86 in 1n8r


Sodium binding site 83 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 83 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 83 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U12, A: G13, A: C2087, S: Lys60, S: Gln61, S: Asn63,

conact list:


AtomAtomDistance (A)
NaC3' A:U124.44
NaO3' A:U123.47
NaC2' A:U124.63
NaC4' A:U124.78
NaO2' A:U123.73
NaOP1 A:G133.87
NaP A:G134.36
NaOP1 A:C20874.38
NaO S:Lys603.45
NaC S:Lys604.41
NaO S:Gln613.24
NaN S:Gln614.66
NaCB S:Gln614.96
NaC S:Gln613.92
NaCA S:Gln613.90
NaND2 S:Asn633.86
NaOD1 S:Asn633.33
NaCG S:Asn633.95

interactive model:


Sodium binding site 84 out of 86 in 1n8r


Sodium binding site 84 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 84 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 84 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: T: His7, T: Ala27, T: Glu61, T: Hoh8323,

conact list:


AtomAtomDistance (A)
NaNE2 T:His72.36
NaND1 T:His74.36
NaCD2 T:His73.48
NaCE1 T:His73.16
NaCG T:His74.55
NaCB T:Ala274.28
NaOE1 T:Glu613.15
NaOE2 T:Glu612.49
NaCD T:Glu613.17
NaCG T:Glu614.62
NaO T:Hoh83233.12

interactive model:


Sodium binding site 85 out of 86 in 1n8r


Sodium binding site 85 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 85 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 85 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U308, A: G334, A: U335, A: A339, A: C342, U: Ser94, U: Asn95, U: Hoh1124,

conact list:


AtomAtomDistance (A)
NaN3 A:U3084.99
NaC5 A:U3084.76
NaC4 A:U3083.99
NaO4 A:U3082.87
NaN2 A:G3344.05
NaC2 A:G3344.89
NaC2 A:U3354.07
NaN1 A:U3354.56
NaC1' A:U3353.96
NaO2 A:U3352.97
NaC2' A:U3353.96
NaO2' A:U3353.18
NaC6 A:A3394.80
NaN6 A:A3393.80
NaN3 A:C3424.81
NaC2 A:C3423.92
NaN1 A:C3424.68
NaC1' A:C3424.44
NaO2 A:C3422.75
NaO2' A:C3424.67
NaO U:Ser942.92
NaCB U:Ser943.20
NaOG U:Ser942.20
NaC U:Ser943.32
NaCA U:Ser943.90
NaN U:Asn953.94
NaCB U:Asn954.60
NaND2 U:Asn954.52
NaOD1 U:Asn952.65
NaCG U:Asn953.71
NaCA U:Asn954.25
NaO U:Hoh11242.68

interactive model:


Sodium binding site 86 out of 86 in 1n8r


Sodium binding site 86 out of 86 in 1n8r
Click to enlarge
stereopicture of Sodium binding site 86 out of 86 in 1n8r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 86 of Sodium in the PDB 1n8r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: U391, A: U392, A: A395, A: U398, 4: Arg42, A: Hoh3051, A: Hoh3145, A: Hoh3417, A: Hoh4804, A: Hoh5826, A: Hoh6961, A: Hoh7871, 4: Hoh8544,

conact list:


AtomAtomDistance (A)
NaN3 A:U3914.66
NaC4 A:U3914.32
NaO4 A:U3913.26
NaN3 A:U3924.58
NaC4 A:U3924.51
NaO4 A:U3923.67
NaOP1 A:A3953.64
NaP A:A3954.06
NaOP2 A:A3953.59
NaO5' A:A3954.65
NaC4 A:U3984.66
NaO4 A:U3983.75
NaO 4:Arg424.20
NaCB 4:Arg424.33
NaCD 4:Arg423.41
NaC 4:Arg424.68
NaCG 4:Arg423.34
NaNE 4:Arg424.73
NaCA 4:Arg424.76
NaO A:Hoh30514.91
NaO A:Hoh31453.64
NaO A:Hoh34174.63
NaO A:Hoh48043.61
NaO A:Hoh58263.61
NaO A:Hoh69612.78
NaO A:Hoh78713.56
NaO 4:Hoh85442.76

interactive model:




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