Atomistry » Sodium » PDB 1m90-1nji » 1n76
Atomistry »
  Sodium »
    PDB 1m90-1nji »
      1n76 »

Sodium in PDB 1n76: Crystal Structure of Human Seminal Lactoferrin at 3.4 A Resolution

Protein crystallography data

The structure of Crystal Structure of Human Seminal Lactoferrin at 3.4 A Resolution, PDB code: 1n76 was solved by J.Kumar, W.Weber, S.Munchau, S.Yadav, S.B.Singh, K.Sarvanan, M.Paramsivam, S.Sharma, P.Kaur, A.Bhushan, A.Srinivasan, C.Betzel, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.65 / 3.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.052, 97.507, 156.790, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 26.6

Other elements in 1n76:

The structure of Crystal Structure of Human Seminal Lactoferrin at 3.4 A Resolution also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Human Seminal Lactoferrin at 3.4 A Resolution (pdb code 1n76). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Seminal Lactoferrin at 3.4 A Resolution, PDB code: 1n76:

Sodium binding site 1 out of 1 in 1n76

Go back to Sodium Binding Sites List in 1n76
Sodium binding site 1 out of 1 in the Crystal Structure of Human Seminal Lactoferrin at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Seminal Lactoferrin at 3.4 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na692

b:66.9
occ:1.00
ND1 A:HIS253 3.0 39.4 1.0
OE2 A:GLU80 3.3 46.4 1.0
OE1 A:GLU80 3.4 34.0 1.0
N A:LYS301 3.5 38.6 1.0
CG2 A:THR58 3.6 40.2 1.0
CD A:GLU80 3.7 35.2 1.0
C A:PHE300 3.8 41.9 1.0
CG A:HIS253 3.9 37.9 1.0
CE1 A:HIS253 3.9 38.2 1.0
CB A:HIS253 3.9 40.2 1.0
CB A:LYS301 4.0 39.8 1.0
CA A:LYS301 4.0 40.2 1.0
CA A:PHE300 4.1 41.4 1.0
O A:PHE300 4.5 47.3 1.0
CB A:THR58 4.5 40.0 1.0
CG A:LYS301 4.7 42.7 1.0
OH A:TYR82 4.7 40.1 1.0
N A:PHE300 5.0 43.3 1.0

Reference:

J.Kumar, W.Weber, S.Munchau, S.Yadav, S.B.Singh, K.Sarvanan, M.Paramsivam, S.Sharma, P.Kaur, A.Bhushan, A.Srinivasan, C.Betzel, T.P.Singh. Crystal Structure of Human Seminal Lactoferrin at 3.4A Resolution Indian J.Biochem.Biophys. V. 40 14 2003.
ISSN: ISSN 0301-1208
Page generated: Tue Dec 15 05:30:45 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy