Sodium in PDB 1moj: Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum

The structure of Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum, PDB code: 1moj was solved by K.Zeth, S.Offermann, L.O.Essen, D.Oesterhelt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.88 / 1.90
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	90.747, 90.747, 149.410, 90.00, 90.00, 120.00
R / Rfree (%)	14.7 / 18.2

The structure of Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Iron	(Fe)	6 atoms

The binding sites of Sodium atom in the Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum (pdb code 1moj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum, PDB code: 1moj:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum within 5.0Å range: probe atom residue distance (Å) B Occ A:Na311 b:21.4 occ:1.00 OE1 A:GLU59 3.0 27.0 1.0 OE1 D:GLU59 3.2 22.5 1.0 CG2 D:VAL176 4.0 21.0 1.0 CG2 A:VAL176 4.1 18.9 1.0 CD A:GLU59 4.2 26.6 1.0 CB A:ALA58 4.2 16.5 1.0 CB D:ALA58 4.2 14.8 1.0 CD D:GLU59 4.4 23.6 1.0 OG1 A:THR174 4.7 15.0 1.0 OG1 D:THR174 4.7 15.6 1.0 CB A:GLU59 4.7 20.5 1.0 CB D:GLU59 4.8 17.8 1.0 CG A:GLU59 4.9 26.9 1.0 C A:ALA58 5.0 17.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of An Archaeal Dps-Homologue From Halobacterium Salinarum within 5.0Å range: probe atom residue distance (Å) B Occ C:Na312 b:20.5 occ:0.50 OE1 C:GLU59 3.1 24.9 1.0 CG2 C:VAL176 3.9 14.1 1.0 CB C:ALA58 4.3 17.8 1.0 CD C:GLU59 4.3 22.9 1.0 OG1 C:THR174 4.6 15.7 1.0 CB C:GLU59 4.9 19.6 1.0

K.Zeth, S.Offermann, L.O.Essen, D.Oesterhelt. Iron-Oxo Clusters Biomineralizing on Protein Surfaces: Structural Analysis of Halobacterium Salinarum Dpsa in Its Low- and High-Iron States. Proc.Natl.Acad.Sci.Usa V. 101 13780 2004.
ISSN: ISSN 0027-8424
PubMed: 15365182
DOI: 10.1073/PNAS.0401821101