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Sodium in PDB 1mmy: Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose

Enzymatic activity of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose

All present enzymatic activity of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose:
5.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose, PDB code: 1mmy was solved by J.B.Thoden, J.Kim, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.900, 76.300, 210.800, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose (pdb code 1mmy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose, PDB code: 1mmy:

Sodium binding site 1 out of 1 in 1mmy

Go back to Sodium Binding Sites List in 1mmy
Sodium binding site 1 out of 1 in the Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Galactose Mutarotase From Lactococcus Lactis Complexed with D-Quinovose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na349

b:38.8
occ:1.00
 OD1 B:ASP13 2.5 18.4 1.0
OD1 A:ASP13 2.5 22.0 1.0
O A:HOH551 2.5 32.7 1.0
O A:GLY11 2.5 20.3 1.0
OD2 B:ASP13 2.5 15.4 1.0
CG B:ASP13 2.8 21.6 1.0
C A:GLY11 3.3 19.0 1.0
CG A:ASP13 3.5 28.0 1.0
O A:HOH356 3.6 17.8 1.0
O A:SER12 3.7 17.4 1.0
C A:SER12 3.9 24.0 1.0
CA A:GLY11 4.0 13.8 1.0
OD2 A:ASP13 4.1 20.2 1.0
O B:HOH455 4.1 35.8 1.0
O B:GLY11 4.1 22.2 1.0
N A:SER12 4.2 19.7 1.0
CB B:ASP13 4.2 19.4 1.0
N A:ASP13 4.3 11.9 1.0
CA A:SER12 4.3 18.7 1.0
CA A:ASP13 4.6 10.2 1.0
CB A:ASP13 4.6 12.5 1.0
N B:ASP13 4.8 17.6 1.0
CA B:ASP13 4.9 18.4 1.0
OH B:TYR109 4.9 22.0 1.0
C B:SER12 5.0 18.0 1.0

Reference:

J.B.Thoden, J.Kim, F.M.Raushel, H.M.Holden. Structural and Kinetic Studies of Sugar Binding to Galactose Mutarotase From Lactococcus Lactis. J.Biol.Chem. V. 277 45458 2002.
ISSN: ISSN 0021-9258
PubMed: 12218067
DOI: 10.1074/JBC.M208395200
Page generated: Sun Oct 6 20:33:28 2024

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