Sodium in PDB 1mj9: Crystal Structure of Yeast ESA1(C304S) Mutant Complexed with Coenzyme A

The structure of Crystal Structure of Yeast ESA1(C304S) Mutant Complexed with Coenzyme A, PDB code: 1mj9 was solved by Y.Yan, S.Harper, D.Speicher, R.Marmorstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	I 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	181.301, 181.301, 181.301, 90.00, 90.00, 90.00
R / Rfree (%)	23.2 / 25.5

The binding sites of Sodium atom in the Crystal Structure of Yeast ESA1(C304S) Mutant Complexed with Coenzyme A (pdb code 1mj9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Yeast ESA1(C304S) Mutant Complexed with Coenzyme A, PDB code: 1mj9:

Sodium binding site 1 out of 1 in the Crystal Structure of Yeast ESA1(C304S) Mutant Complexed with Coenzyme A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Yeast ESA1(C304S) Mutant Complexed with Coenzyme A within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:47.8 occ:1.00 S1P A:COA500 1.6 52.6 1.0 O A:ALA303 2.9 24.2 1.0 C2P A:COA500 3.2 43.4 1.0 CA A:SER304 3.6 25.4 1.0 C A:ALA303 3.8 23.3 1.0 N A:ILE305 4.1 25.9 1.0 N A:SER304 4.1 24.2 1.0 C A:SER304 4.3 26.9 1.0 CD2 A:LEU341 4.3 32.8 1.0 O A:GLU338 4.3 25.3 1.0 CG2 A:ILE305 4.4 22.9 1.0 C3P A:COA500 4.4 40.9 1.0 CB A:SER304 4.7 26.4 1.0 OG A:SER304 4.7 30.8 1.0 O A:HOH527 4.8 43.0 1.0 CG1 A:VAL302 4.8 22.7 1.0

Y.Yan, S.Harper, D.W.Speicher, R.Marmorstein. The Catalytic Mechanism of the ESA1 Histone Acetyltransferase Involves A Self-Acetylated Intermediate. Nat.Struct.Biol. V. 9 862 2002.
ISSN: ISSN 1072-8368
PubMed: 12368900
DOI: 10.1038/NSB0902-638