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Sodium in PDB 1mau: Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation

Enzymatic activity of Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation

All present enzymatic activity of Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation:
6.1.1.2;

Protein crystallography data

The structure of Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation, PDB code: 1mau was solved by P.Retailleau, X.Huang, Y.Yin, M.Hu, V.Weinreb, P.Vachette, C.Vonrhein, G.Bricogne, P.Roversi, V.Ilyin, C.W.Carter Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.15
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.133, 62.133, 217.807, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 24.3

Other elements in 1mau:

The structure of Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation (pdb code 1mau). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation, PDB code: 1mau:

Sodium binding site 1 out of 1 in 1mau

Go back to Sodium Binding Sites List in 1mau
Sodium binding site 1 out of 1 in the Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Tryptophanyl-Trna Synthetase Complexed with Atp and Tryptophanamide in A Pre-Transition State Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na499

b:49.3
occ:1.00
 O A:GLN30 2.3 31.8 1.0
O A:GLN74 2.4 31.1 1.0
O A:HOH540 2.4 43.9 1.0
O A:TYR33 2.5 38.2 1.0
C A:GLN74 3.5 31.0 1.0
C A:GLN30 3.5 34.1 1.0
C A:TYR33 3.7 39.4 1.0
O2 A:GOL940 3.7 50.9 1.0
CA A:GLN74 4.0 25.4 1.0
CB A:GLN74 4.0 26.0 1.0
CA A:ASN34 4.3 32.8 1.0
CA A:GLN30 4.3 28.2 1.0
N A:ASN34 4.4 33.8 1.0
N A:HIS31 4.5 34.0 1.0
N A:CYS35 4.6 29.8 1.0
N A:TYR33 4.6 39.8 1.0
N A:ALA75 4.6 27.1 1.0
CA A:HIS31 4.6 35.9 1.0
CA A:TYR33 4.7 38.6 1.0
CE A:MET1 4.7 56.0 1.0
OE1 A:GLN74 4.8 24.7 1.0
C A:HIS31 4.8 41.4 1.0
C2 A:GOL940 4.8 51.4 1.0
CB A:GLN30 4.8 28.7 1.0
O1 A:GOL940 4.9 51.2 1.0
C A:ASN34 5.0 33.1 1.0
C1 A:GOL940 5.0 46.1 1.0
CA A:ALA75 5.0 26.9 1.0
SD A:MET1 5.0 59.1 1.0

Reference:

P.Retailleau, X.Huang, Y.Yin, M.Hu, V.Weinreb, P.Vachette, C.Vonrhein, G.Bricogne, P.Roversi, V.Ilyin, C.W.Carter. Interconversion of Atp Binding and Conformational Free Energies By Tryptophanyl-Trna Synthetase: Structures of Atp Bound to Open and Closed, Pre-Transition-State Conformations. J.Mol.Biol. V. 325 39 2003.
ISSN: ISSN 0022-2836
PubMed: 12473451
DOI: 10.1016/S0022-2836(02)01156-7
Page generated: Sun Oct 6 20:31:31 2024

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