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Sodium in PDB 1m2x: Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril

Enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril

All present enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril, PDB code: 1m2x was solved by I.Garcia-Saez, O.Dideberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.50
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 159.685, 159.685, 97.815, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 20.8

Other elements in 1m2x:

The structure of Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril also contains other interesting chemical elements:

Zinc (Zn) 12 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril (pdb code 1m2x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril, PDB code: 1m2x:

Sodium binding site 1 out of 1 in 1m2x

Go back to Sodium Binding Sites List in 1m2x
Sodium binding site 1 out of 1 in the Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Metallo-Beta-Lactamase Blab of Chryseobacterium Meningosepticum in Complex with the Inhibitor D- Captopril within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:28.0
occ:1.00
 O A:LYS167 2.8 12.0 1.0
O A:HOH975 3.4 35.4 1.0
N A:LYS167 3.5 13.3 1.0
CA A:ASN150 3.6 14.8 0.5
C A:ASN150 3.6 13.8 0.5
CA A:ASN150 3.6 14.8 0.5
C A:ASN150 3.7 13.7 0.5
CD A:ARG169 3.7 12.3 1.0
C A:LYS167 3.7 11.8 1.0
CA A:ALA147 3.8 11.1 1.0
O A:LEU146 3.8 9.9 1.0
O A:ALA147 4.0 12.6 1.0
CG A:ARG169 4.1 9.9 1.0
CA A:LYS167 4.3 13.0 1.0
O A:ASN150 4.3 13.3 0.5
N A:ASN150 4.3 13.9 0.5
N A:ASN150 4.3 13.9 0.5
C A:ALA147 4.4 11.6 1.0
O A:ASN150 4.4 13.3 0.5
C A:LEU146 4.4 9.3 1.0
N A:ALA147 4.4 9.7 1.0
CG A:ASN150 4.7 20.8 0.5
CB A:ASN150 4.7 17.9 0.5
N A:PRO168 4.7 10.9 1.0
CB A:ALA147 4.7 11.7 1.0
ND2 A:ASN150 4.8 22.9 0.5
CB A:ASN150 4.8 17.7 0.5
O A:HOH958 4.9 17.4 1.0
CA A:PRO168 4.9 10.9 1.0
NH1 A:ARG169 4.9 15.2 1.0
OD1 A:ASN150 4.9 23.6 0.5
NE A:ARG169 4.9 11.7 1.0
OD1 A:ASN150 5.0 23.8 0.5

Reference:

I.Garcia-Saez, J.Hopkins, C.Papamicael, N.Franceschini, G.Amicosante, G.M.Rossolini, M.Galleni, J.M.Frere, O.Dideberg. The 1.5 A Structure of Chryseobacterium Meningosepticum Zn-Beta-Lactamase in Complex with the Inhibitor, D-Captopril J.Biol.Chem. V. 278 23868 2003.
ISSN: ISSN 0021-9258
PubMed: 12684522
DOI: 10.1074/JBC.M301062200
Page generated: Sun Oct 6 20:19:15 2024

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