Sodium in PDB 1lz8: Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines

All present enzymatic activity of Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines:
3.2.1.17;

The structure of Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines, PDB code: 1lz8 was solved by Z.Dauter, M.Dauter, E.De La Fortelle, G.Bricogne, G.M.Sheldrick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 1.53
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.810, 78.810, 36.800, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 31

The structure of Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Sodium atom in the Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines (pdb code 1lz8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines, PDB code: 1lz8:

Sodium binding site 1 out of 1 in the Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Phased on Anomalous Signal of Sulfurs and Chlorines within 5.0Å range: probe atom residue distance (Å) B Occ A:Na209 b:17.4 occ:1.00 O A:SER60 2.4 16.3 1.0 O A:HOH221 2.4 16.4 1.0 O A:ARG73 2.5 19.4 1.0 O A:CYS64 2.5 11.4 1.0 O A:HOH216 2.5 14.2 1.0 OG A:SER72 2.6 18.6 1.0 CB A:SER72 3.3 18.8 1.0 C A:ARG73 3.5 16.8 1.0 C A:CYS64 3.5 9.7 1.0 C A:SER60 3.6 14.6 1.0 N A:ARG73 3.8 16.7 1.0 CA A:ASN65 4.0 14.3 1.0 CA A:SER60 4.0 11.0 1.0 C A:SER72 4.1 23.0 1.0 CA A:ARG73 4.2 14.7 1.0 N A:ASN65 4.2 13.4 1.0 CB A:SER60 4.2 12.3 1.0 N A:ASN74 4.3 14.9 1.0 CA A:SER72 4.3 20.0 1.0 N A:CYS64 4.5 12.9 1.0 CA A:ASN74 4.6 15.2 1.0 O A:ARG61 4.6 20.4 1.0 C A:ARG61 4.6 21.5 1.0 N A:ARG61 4.6 16.9 1.0 OD1 A:ASN65 4.6 17.0 1.0 N A:ASP66 4.7 9.8 1.0 CB A:THR69 4.7 14.2 1.0 CB A:ASN74 4.7 12.7 1.0 CA A:CYS64 4.7 12.1 1.0 CL A:CL203 4.7 19.4 1.0 O A:SER72 4.7 23.1 1.0 C A:ASN65 4.9 10.1 1.0 CA A:ARG61 4.9 18.6 1.0 CB A:ASN65 4.9 12.1 1.0 N A:TRP62 4.9 15.2 1.0

Z.Dauter, M.Dauter, E.De La Fortelle, G.Bricogne, G.M.Sheldrick. Can Anomalous Signal of Sulfur Become A Tool For Solving Protein Crystal Structures? J.Mol.Biol. V. 289 83 1999.
ISSN: ISSN 0022-2836
PubMed: 10339407
DOI: 10.1006/JMBI.1999.2743