Sodium in PDB 1ltm: Accelerated X-Ray Structure Elucidation of A 36 kDa Muramidase/Transglycosylase Using Warp

The structure of Accelerated X-Ray Structure Elucidation of A 36 kDa Muramidase/Transglycosylase Using Warp, PDB code: 1ltm was solved by E.J.Van Asselt, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.329, 67.883, 98.853, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 22.1

The binding sites of Sodium atom in the Accelerated X-Ray Structure Elucidation of A 36 kDa Muramidase/Transglycosylase Using Warp (pdb code 1ltm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Accelerated X-Ray Structure Elucidation of A 36 kDa Muramidase/Transglycosylase Using Warp, PDB code: 1ltm:

Sodium binding site 1 out of 1 in the Accelerated X-Ray Structure Elucidation of A 36 kDa Muramidase/Transglycosylase Using Warp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Accelerated X-Ray Structure Elucidation of A 36 kDa Muramidase/Transglycosylase Using Warp within 5.0Å range: probe atom residue distance (Å) B Occ A:Na400 b:15.3 occ:1.00 O A:HIS243 2.2 16.9 1.0 OD1 A:ASP237 2.3 17.6 1.0 OD1 A:ASP241 2.3 14.3 1.0 OD2 A:ASP251 2.5 15.0 1.0 OD1 A:ASP251 2.5 16.4 1.0 OG A:SER239 2.7 13.4 1.0 CG A:ASP251 2.9 15.9 1.0 CG A:ASP237 3.2 19.6 1.0 O A:HOH531 3.3 30.4 1.0 C A:HIS243 3.3 17.4 1.0 CG A:ASP241 3.3 15.2 1.0 CB A:SER239 3.7 14.2 1.0 CA A:ASP237 3.8 16.2 1.0 OD2 A:ASP241 3.8 19.2 1.0 CB A:ASP237 3.9 15.8 1.0 N A:SER239 3.9 13.5 1.0 N A:HIS243 4.0 16.6 1.0 N A:ASP241 4.0 15.9 1.0 CA A:HIS243 4.1 18.2 1.0 N A:GLY240 4.1 14.2 1.0 OD2 A:ASP237 4.1 19.6 1.0 C A:ASP237 4.2 15.7 1.0 CA A:SER239 4.2 15.2 1.0 N A:ILE244 4.2 16.6 1.0 N A:PHE238 4.3 14.9 1.0 CA A:ILE244 4.4 16.6 1.0 CB A:ASP251 4.4 12.5 1.0 CB A:ASP241 4.5 14.1 1.0 C A:SER239 4.5 16.3 1.0 CB A:HIS243 4.6 19.8 1.0 CA A:ASP241 4.7 14.6 1.0 N A:ASN245 4.7 15.2 1.0 N A:GLY242 4.7 13.5 1.0 C A:ASP241 4.9 14.4 1.0

E.J.Van Asselt, A.Perrakis, K.H.Kalk, V.S.Lamzin, B.W.Dijkstra. Accelerated X-Ray Structure Elucidation of A 36 kDa Muramidase/Transglycosylase Using Warp. Acta Crystallogr.,Sect.D V. 54 58 1998.
ISSN: ISSN 0907-4449
PubMed: 9761817