Atomistry » Sodium » PDB 1l0r-1m65 » 1lra
Atomistry »
  Sodium »
    PDB 1l0r-1m65 »
      1lra »

Sodium in PDB 1lra: Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution

Enzymatic activity of Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution

All present enzymatic activity of Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution:
3.1.27.3;

Protein crystallography data

The structure of Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution, PDB code: 1lra was solved by J.Pletinckx, J.Steyaert, H.-W.Choe, U.Heinemann, L.Wyns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 32.440, 49.640, 26.090, 90.00, 99.75, 90.00
R / Rfree (%) n/a / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution (pdb code 1lra). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution, PDB code: 1lra:

Sodium binding site 1 out of 1 in 1lra

Go back to Sodium Binding Sites List in 1lra
Sodium binding site 1 out of 1 in the Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystallographic Study of Glu 58 Ala Rnase T1(Asterisk)2'-Guanosine Monophosphate at 1.9 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na106

b:19.4
occ:1.00
 O A:HOH107 2.9 3.0 1.0
O A:HOH127 3.1 20.5 1.0
N A:SER63 3.2 8.8 1.0
O A:HOH111 3.2 6.3 1.0
OG A:SER63 3.3 15.3 1.0
CA A:LEU62 3.6 7.9 1.0
CB A:SER63 3.9 7.9 1.0
OD1 A:ASN9 4.0 12.0 1.0
C A:LEU62 4.0 3.3 1.0
OH A:TYR11 4.1 8.0 1.0
O A:ILE61 4.1 4.4 1.0
CA A:SER63 4.2 7.8 1.0
CD2 A:LEU62 4.3 11.0 1.0
OD2 A:ASP76 4.3 3.2 1.0
CB A:LEU62 4.3 8.6 1.0
CA A:GLY74 4.4 6.0 1.0
O A:HOH169 4.7 32.8 1.0
N A:LEU62 4.8 9.6 1.0
CG A:ASN9 4.8 13.8 1.0
C A:ILE61 4.8 2.0 1.0
O A:PRO73 4.9 4.4 1.0
CG A:LEU62 4.9 7.4 1.0

Reference:

J.Pletinckx, J.Steyaert, I.Zegers, H.W.Choe, U.Heinemann, L.Wyns. Crystallographic Study of GLU58ALA Rnase T1 X 2'-Guanosine Monophosphate at 1.9-A Resolution. Biochemistry V. 33 1654 1994.
ISSN: ISSN 0006-2960
PubMed: 7906540
DOI: 10.1021/BI00173A006
Page generated: Sun Oct 6 20:17:48 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy