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Sodium in PDB 1lpi: Hew Lysozyme: Trp...Na Cation-Pi Interaction

Enzymatic activity of Hew Lysozyme: Trp...Na Cation-Pi Interaction

All present enzymatic activity of Hew Lysozyme: Trp...Na Cation-Pi Interaction:
3.2.1.17;

Protein crystallography data

The structure of Hew Lysozyme: Trp...Na Cation-Pi Interaction, PDB code: 1lpi was solved by J.Wouters, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.100, 79.100, 37.900, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 26.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Hew Lysozyme: Trp...Na Cation-Pi Interaction (pdb code 1lpi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hew Lysozyme: Trp...Na Cation-Pi Interaction, PDB code: 1lpi:

Sodium binding site 1 out of 1 in 1lpi

Go back to Sodium Binding Sites List in 1lpi
Sodium binding site 1 out of 1 in the Hew Lysozyme: Trp...Na Cation-Pi Interaction


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hew Lysozyme: Trp...Na Cation-Pi Interaction within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na200

b:41.8
occ:1.00
NH2 A:ARG125 3.7 57.2 1.0
CZ A:ARG125 3.9 56.0 1.0
NH1 A:ARG125 4.1 58.4 1.0
O A:HOH239 4.1 44.7 1.0
CZ2 A:TRP123 4.2 16.4 1.0
CH2 A:TRP123 4.2 16.6 1.0
CE2 A:TRP123 4.3 15.6 1.0
CZ3 A:TRP123 4.4 16.1 1.0
CD2 A:TRP123 4.5 14.0 1.0
CB A:ALA122 4.5 26.5 1.0
NE A:ARG125 4.5 53.1 1.0
CE3 A:TRP123 4.5 14.2 1.0
O A:ALA122 4.7 17.2 1.0
NE1 A:TRP123 4.9 13.6 1.0
C A:ALA122 4.9 20.8 1.0

Reference:

J.Wouters, J.Wouters. N/A N/A.
ISSN: ISSN 0961-8368
PubMed: 9828016
Page generated: Tue Dec 15 05:29:29 2020

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