Sodium in PDB 1lcd: Structure of the Complex of Lac Repressor Headpiece and An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics

The binding sites of Sodium atom in the Structure of the Complex of Lac Repressor Headpiece and An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics (pdb code 1lcd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Complex of Lac Repressor Headpiece and An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics, PDB code: 1lcd:

Sodium binding site 1 out of 1 in the Structure of the Complex of Lac Repressor Headpiece and An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Complex of Lac Repressor Headpiece and An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics within 5.0Å range: probe atom residue distance (Å) B Occ C:Na12 b:0.0 occ:1.00 O A:HOH53 2.1 0.0 1.0 O C:HOH923 2.1 0.0 1.0 O A:HOH57 2.2 0.0 1.0 OP1 C:DT4 2.5 0.0 1.0 H1 A:HOH53 2.6 0.0 1.0 H2 C:HOH923 2.6 0.0 1.0 H1 A:HOH57 2.9 0.0 1.0 H2 A:HOH53 2.9 0.0 1.0 H2 A:HOH57 2.9 0.0 1.0 H1 C:HOH923 3.0 0.0 1.0 CG1 A:VAL24 3.2 0.0 1.0 O3' C:DC3 3.4 0.0 1.0 P C:DT4 3.4 0.0 1.0 HD21 A:ASN25 3.6 0.0 1.0 OP2 C:DT4 3.9 0.0 1.0 OH A:TYR47 4.0 0.0 1.0 C3' C:DC3 4.2 0.0 1.0 ND2 A:ASN25 4.5 0.0 1.0 CB A:VAL24 4.5 0.0 1.0 HH A:TYR47 4.5 0.0 1.0 H2 A:HOH58 4.6 0.0 1.0 C5' C:DC3 4.6 0.0 1.0 HD22 A:ASN25 4.7 0.0 1.0 C4' C:DC3 4.7 0.0 1.0 O A:HOH58 4.8 0.0 1.0 CB A:PRO49 4.8 0.0 1.0 O5' C:DT4 4.8 0.0 1.0 H A:ASN50 4.8 0.0 1.0 CG2 A:VAL24 5.0 0.0 1.0

V.P.Chuprina, J.A.Rullmann, R.M.Lamerichs, J.H.Van Boom, R.Boelens, R.Kaptein. Structure of the Complex of Lac Repressor Headpiece and An 11 Base-Pair Half-Operator Determined By Nuclear Magnetic Resonance Spectroscopy and Restrained Molecular Dynamics. J.Mol.Biol. V. 234 446 1993.
ISSN: ISSN 0022-2836
PubMed: 8230225
DOI: 10.1006/JMBI.1993.1598