Sodium in PDB 1ky8: Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase

All present enzymatic activity of Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase:
1.2.1.9;

The structure of Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase, PDB code: 1ky8 was solved by E.Pohl, N.Brunner, M.Wilmanns, R.Hensel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.40
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	185.200, 185.200, 132.100, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 24.2

The binding sites of Sodium atom in the Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase (pdb code 1ky8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase, PDB code: 1ky8:

Sodium binding site 1 out of 1 in the Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1001 b:49.5 occ:1.00 O A:GLY255 2.3 43.9 1.0 O A:HOH712 2.4 47.7 1.0 O A:HOH629 2.4 41.9 1.0 O A:HOH658 2.6 46.7 1.0 O A:HOH620 2.6 38.0 1.0 C A:GLY255 3.3 45.8 1.0 O A:HOH855 3.5 68.2 1.0 O A:HOH763 3.6 58.0 1.0 CA A:GLY256 3.8 45.0 1.0 N A:GLY256 4.0 45.8 1.0 OD1 A:ASP234 4.1 49.0 1.0 N A:VAL257 4.2 45.6 1.0 O A:ALA232 4.3 49.2 1.0 C A:GLY256 4.3 46.3 1.0 O A:VAL257 4.4 41.9 1.0 CA A:GLY255 4.4 45.8 1.0 CE A:LYS258 4.5 42.1 1.0 NZ A:LYS258 4.6 38.2 1.0 O A:VAL254 4.7 47.3 1.0

E.Pohl, N.Brunner, M.Wilmanns, R.Hensel. The Crystal Structure of the Allosteric Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase From the Hyperthermophilic Archaeum Thermoproteus Tenax J.Biol.Chem. V. 277 19938 2002.
ISSN: ISSN 0021-9258
PubMed: 11842090
DOI: 10.1074/JBC.M112244200