Sodium in PDB 1jz6: E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
Enzymatic activity of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
All present enzymatic activity of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole:
3.2.1.23;
Protein crystallography data
The structure of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole, PDB code: 1jz6
was solved by
D.H.Juers,
T.D.Heightman,
A.Vasella,
B.W.Matthews,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
17.00 /
2.10
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
149.690,
168.400,
200.920,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
16 /
23.1
|
Other elements in 1jz6:
The structure of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole also contains other interesting chemical elements:
Sodium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Sodium atom in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
(pdb code 1jz6). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 11 binding sites of Sodium where determined in the
E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole, PDB code: 1jz6:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Sodium binding site 1 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 1 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na3101
b:29.7
occ:1.00
|
O
|
A:PHE601
|
2.3
|
26.2
|
1.0
|
|
O
|
A:HOH8769
|
2.3
|
29.6
|
1.0
|
|
OD1
|
A:ASN604
|
2.4
|
22.9
|
1.0
|
|
OD2
|
A:ASP201
|
2.5
|
24.1
|
1.0
|
|
O6
|
A:GTZ2001
|
2.6
|
23.8
|
1.0
|
|
CG
|
A:ASP201
|
3.3
|
31.1
|
1.0
|
|
CG
|
A:ASN604
|
3.4
|
38.4
|
1.0
|
|
C
|
A:PHE601
|
3.4
|
39.8
|
1.0
|
|
C6
|
A:GTZ2001
|
3.6
|
31.5
|
1.0
|
|
ND2
|
A:ASN604
|
3.6
|
17.3
|
1.0
|
|
OD1
|
A:ASP201
|
3.8
|
22.4
|
1.0
|
|
OH
|
A:TYR100
|
3.8
|
34.1
|
1.0
|
|
NE1
|
A:TRP568
|
4.1
|
22.2
|
1.0
|
|
O4
|
A:GTZ2001
|
4.2
|
22.8
|
1.0
|
|
C4
|
A:GTZ2001
|
4.2
|
21.7
|
1.0
|
|
N
|
A:CYS602
|
4.2
|
31.3
|
1.0
|
|
CA
|
A:CYS602
|
4.2
|
31.3
|
1.0
|
|
CB
|
A:PHE601
|
4.3
|
21.8
|
1.0
|
|
C5
|
A:GTZ2001
|
4.4
|
30.2
|
1.0
|
|
CA
|
A:PHE601
|
4.4
|
23.8
|
1.0
|
|
CB
|
A:ASP201
|
4.5
|
27.7
|
1.0
|
|
O
|
A:HOH8554
|
4.5
|
26.9
|
1.0
|
|
NE2
|
A:HIS540
|
4.6
|
20.6
|
1.0
|
|
C
|
A:CYS602
|
4.8
|
32.2
|
1.0
|
|
CD2
|
A:PHE601
|
4.8
|
34.2
|
1.0
|
|
CB
|
A:ASN604
|
4.8
|
17.6
|
1.0
|
|
O
|
A:ASP201
|
4.8
|
20.1
|
1.0
|
|
CE2
|
A:TRP568
|
4.8
|
25.0
|
1.0
|
|
CZ
|
A:TYR100
|
4.9
|
26.4
|
1.0
|
|
CZ2
|
A:TRP568
|
4.9
|
25.4
|
1.0
|
|
Sodium binding site 2 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 2 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na3102
b:24.8
occ:1.00
|
O
|
A:PHE556
|
2.2
|
21.9
|
1.0
|
|
O
|
A:LEU562
|
2.4
|
23.7
|
1.0
|
|
O
|
A:TYR559
|
2.4
|
29.5
|
1.0
|
|
O
|
A:HOH8879
|
2.5
|
31.3
|
1.0
|
|
O
|
A:HOH9032
|
2.5
|
26.9
|
1.0
|
|
O
|
A:PRO560
|
3.4
|
24.6
|
1.0
|
|
C
|
A:TYR559
|
3.4
|
31.7
|
1.0
|
|
C
|
A:PHE556
|
3.4
|
25.9
|
1.0
|
|
C
|
A:LEU562
|
3.5
|
20.5
|
1.0
|
|
CA
|
A:PRO560
|
3.6
|
13.7
|
1.0
|
|
C
|
A:PRO560
|
3.7
|
15.3
|
1.0
|
|
N
|
A:PRO560
|
3.9
|
26.4
|
1.0
|
|
O
|
A:HOH8776
|
4.0
|
29.5
|
1.0
|
|
N
|
A:LEU562
|
4.2
|
18.1
|
1.0
|
|
CA
|
A:PHE556
|
4.2
|
14.0
|
1.0
|
|
CA
|
A:LEU562
|
4.3
|
16.3
|
1.0
|
|
N
|
A:GLN563
|
4.4
|
25.2
|
1.0
|
|
CA
|
A:GLN563
|
4.4
|
24.8
|
1.0
|
|
N
|
A:ARG557
|
4.5
|
19.4
|
1.0
|
|
CA
|
A:TYR559
|
4.6
|
19.9
|
1.0
|
|
CB
|
A:LEU562
|
4.6
|
17.8
|
1.0
|
|
N
|
A:TYR559
|
4.6
|
16.2
|
1.0
|
|
CA
|
A:ARG557
|
4.6
|
12.6
|
1.0
|
|
CG
|
A:GLN563
|
4.7
|
18.3
|
1.0
|
|
O
|
A:ARG557
|
4.7
|
20.2
|
1.0
|
|
N
|
A:ARG561
|
4.7
|
18.1
|
1.0
|
|
C
|
A:ARG557
|
4.7
|
19.5
|
1.0
|
|
CB
|
A:PHE556
|
4.7
|
18.0
|
1.0
|
|
CD1
|
A:LEU350
|
4.8
|
19.6
|
1.0
|
|
CB
|
A:PRO560
|
5.0
|
16.1
|
1.0
|
|
Sodium binding site 3 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 3 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na3103
b:37.4
occ:1.00
|
O
|
A:HOH9094
|
2.4
|
50.4
|
1.0
|
|
O
|
A:PRO932
|
2.4
|
32.5
|
1.0
|
|
O
|
A:LEU967
|
2.7
|
33.2
|
1.0
|
|
O
|
A:THR970
|
2.7
|
48.6
|
1.0
|
|
O
|
A:HOH8703
|
2.8
|
31.1
|
1.0
|
|
C
|
A:PRO932
|
3.4
|
40.2
|
1.0
|
|
O
|
A:HOH8976
|
3.4
|
43.1
|
1.0
|
|
CZ
|
A:PHE931
|
3.7
|
35.2
|
1.0
|
|
CE1
|
A:PHE931
|
3.8
|
42.6
|
1.0
|
|
C
|
A:LEU967
|
3.8
|
34.0
|
1.0
|
|
CA
|
A:PRO932
|
3.9
|
38.3
|
1.0
|
|
O
|
A:MET968
|
3.9
|
37.3
|
1.0
|
|
C
|
A:THR970
|
3.9
|
47.0
|
1.0
|
|
CB
|
A:PRO932
|
3.9
|
42.7
|
1.0
|
|
N
|
A:PRO932
|
3.9
|
36.6
|
1.0
|
|
C
|
A:MET968
|
4.0
|
37.1
|
1.0
|
|
CE2
|
A:PHE931
|
4.1
|
27.5
|
1.0
|
|
CA
|
A:MET968
|
4.2
|
38.5
|
1.0
|
|
CD1
|
A:PHE931
|
4.3
|
40.9
|
1.0
|
|
N
|
A:THR970
|
4.3
|
23.0
|
1.0
|
|
CD
|
A:PRO932
|
4.3
|
28.1
|
1.0
|
|
N
|
A:MET968
|
4.4
|
38.5
|
1.0
|
|
CD2
|
A:PHE931
|
4.5
|
33.0
|
1.0
|
|
N
|
A:SER933
|
4.5
|
27.2
|
1.0
|
|
CG
|
A:PRO932
|
4.5
|
39.5
|
1.0
|
|
CG
|
A:PHE931
|
4.7
|
23.7
|
1.0
|
|
CA
|
A:THR970
|
4.7
|
26.4
|
1.0
|
|
N
|
A:GLU969
|
4.7
|
28.4
|
1.0
|
|
C
|
A:PHE931
|
4.7
|
39.9
|
1.0
|
|
N
|
A:SER971
|
4.9
|
35.0
|
1.0
|
|
C
|
A:GLU969
|
4.9
|
43.3
|
1.0
|
|
CA
|
A:SER971
|
4.9
|
37.4
|
1.0
|
|
CA
|
A:LEU967
|
5.0
|
25.2
|
1.0
|
|
CA
|
A:SER933
|
5.0
|
27.3
|
1.0
|
|
Sodium binding site 4 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 4 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na3101
b:35.5
occ:1.00
|
O
|
B:HOH8875
|
2.2
|
31.0
|
1.0
|
|
O
|
B:PHE601
|
2.4
|
24.8
|
1.0
|
|
O6
|
B:GTZ2001
|
2.4
|
33.2
|
1.0
|
|
OD2
|
B:ASP201
|
2.5
|
28.4
|
1.0
|
|
OD1
|
B:ASN604
|
2.5
|
33.9
|
1.0
|
|
CG
|
B:ASP201
|
3.3
|
27.4
|
1.0
|
|
OD1
|
B:ASP201
|
3.4
|
30.5
|
1.0
|
|
CG
|
B:ASN604
|
3.5
|
38.9
|
1.0
|
|
C6
|
B:GTZ2001
|
3.5
|
23.8
|
1.0
|
|
C
|
B:PHE601
|
3.5
|
31.9
|
1.0
|
|
ND2
|
B:ASN604
|
3.7
|
22.8
|
1.0
|
|
OH
|
B:TYR100
|
3.8
|
36.0
|
1.0
|
|
C4
|
B:GTZ2001
|
4.1
|
18.0
|
1.0
|
|
CA
|
B:CYS602
|
4.1
|
27.8
|
1.0
|
|
O4
|
B:GTZ2001
|
4.3
|
24.7
|
1.0
|
|
N
|
B:CYS602
|
4.3
|
21.6
|
1.0
|
|
O
|
B:HOH8665
|
4.3
|
27.5
|
1.0
|
|
NE1
|
B:TRP568
|
4.3
|
28.2
|
1.0
|
|
C5
|
B:GTZ2001
|
4.4
|
30.5
|
1.0
|
|
NE2
|
B:HIS540
|
4.5
|
23.3
|
1.0
|
|
CB
|
B:ASP201
|
4.6
|
25.5
|
1.0
|
|
CA
|
B:PHE601
|
4.6
|
30.9
|
1.0
|
|
CB
|
B:PHE601
|
4.6
|
34.6
|
1.0
|
|
O
|
B:ASP201
|
4.6
|
28.7
|
1.0
|
|
C
|
B:CYS602
|
4.7
|
37.0
|
1.0
|
|
CZ
|
B:TYR100
|
4.8
|
29.1
|
1.0
|
|
CB
|
B:ASN604
|
4.9
|
23.2
|
1.0
|
|
CE2
|
B:TRP568
|
5.0
|
30.4
|
1.0
|
|
Sodium binding site 5 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 5 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na3102
b:24.5
occ:1.00
|
O
|
B:PHE556
|
2.2
|
16.1
|
1.0
|
|
O
|
B:LEU562
|
2.2
|
23.4
|
1.0
|
|
O
|
B:TYR559
|
2.3
|
22.7
|
1.0
|
|
O
|
B:HOH9142
|
2.7
|
29.0
|
1.0
|
|
O
|
B:HOH8984
|
3.1
|
29.0
|
1.0
|
|
O
|
B:PRO560
|
3.2
|
22.7
|
1.0
|
|
C
|
B:PHE556
|
3.3
|
27.7
|
1.0
|
|
C
|
B:TYR559
|
3.4
|
24.4
|
1.0
|
|
C
|
B:LEU562
|
3.4
|
25.6
|
1.0
|
|
C
|
B:PRO560
|
3.7
|
26.0
|
1.0
|
|
CA
|
B:PRO560
|
3.8
|
20.3
|
1.0
|
|
N
|
B:LEU562
|
4.0
|
18.6
|
1.0
|
|
O
|
B:HOH8881
|
4.0
|
30.0
|
1.0
|
|
N
|
B:PRO560
|
4.0
|
23.2
|
1.0
|
|
CA
|
B:PHE556
|
4.0
|
19.6
|
1.0
|
|
CA
|
B:LEU562
|
4.1
|
22.6
|
1.0
|
|
CB
|
B:LEU562
|
4.3
|
18.7
|
1.0
|
|
N
|
B:GLN563
|
4.4
|
21.0
|
1.0
|
|
N
|
B:ARG557
|
4.4
|
23.5
|
1.0
|
|
CA
|
B:TYR559
|
4.5
|
15.6
|
1.0
|
|
N
|
B:TYR559
|
4.5
|
19.9
|
1.0
|
|
CA
|
B:GLN563
|
4.5
|
17.6
|
1.0
|
|
N
|
B:ARG561
|
4.6
|
15.1
|
1.0
|
|
CB
|
B:PHE556
|
4.6
|
16.9
|
1.0
|
|
CA
|
B:ARG557
|
4.6
|
26.8
|
1.0
|
|
CG
|
B:GLN563
|
4.7
|
12.6
|
1.0
|
|
CD1
|
B:LEU350
|
4.7
|
19.2
|
1.0
|
|
C
|
B:ARG557
|
4.7
|
29.4
|
1.0
|
|
O
|
B:ARG557
|
4.8
|
18.5
|
1.0
|
|
O
|
B:ALA555
|
4.8
|
20.4
|
1.0
|
|
C
|
B:ARG561
|
4.9
|
17.6
|
1.0
|
|
CB
|
B:TYR559
|
5.0
|
21.3
|
1.0
|
|
Sodium binding site 6 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 6 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na3103
b:41.3
occ:1.00
|
O
|
B:PRO932
|
2.1
|
35.5
|
1.0
|
|
O
|
B:HOH8811
|
2.5
|
35.2
|
1.0
|
|
O
|
B:LEU967
|
2.7
|
31.8
|
1.0
|
|
O
|
B:HOH9194
|
2.8
|
67.0
|
1.0
|
|
O
|
B:THR970
|
2.8
|
40.7
|
1.0
|
|
CZ
|
B:PHE931
|
3.2
|
52.2
|
1.0
|
|
C
|
B:PRO932
|
3.2
|
32.1
|
1.0
|
|
CE1
|
B:PHE931
|
3.5
|
37.2
|
1.0
|
|
CE2
|
B:PHE931
|
3.6
|
43.1
|
1.0
|
|
O
|
B:HOH9090
|
3.7
|
45.3
|
1.0
|
|
C
|
B:LEU967
|
3.7
|
38.9
|
1.0
|
|
CA
|
B:MET968
|
3.8
|
44.6
|
1.0
|
|
CA
|
B:PRO932
|
4.0
|
37.9
|
1.0
|
|
C
|
B:THR970
|
4.1
|
49.5
|
1.0
|
|
CD1
|
B:PHE931
|
4.1
|
34.7
|
1.0
|
|
N
|
B:SER933
|
4.1
|
27.3
|
1.0
|
|
C
|
B:MET968
|
4.2
|
52.6
|
1.0
|
|
CB
|
B:PRO932
|
4.2
|
37.5
|
1.0
|
|
CD2
|
B:PHE931
|
4.2
|
35.1
|
1.0
|
|
N
|
B:MET968
|
4.2
|
36.9
|
1.0
|
|
N
|
B:PRO932
|
4.2
|
40.9
|
1.0
|
|
O
|
B:MET968
|
4.3
|
59.2
|
1.0
|
|
CA
|
B:SER933
|
4.4
|
19.1
|
1.0
|
|
CG
|
B:PHE931
|
4.5
|
42.0
|
1.0
|
|
O
|
B:PRO788
|
4.6
|
29.1
|
1.0
|
|
N
|
B:THR970
|
4.6
|
25.9
|
1.0
|
|
CD
|
B:PRO932
|
4.7
|
44.8
|
1.0
|
|
C
|
B:PHE931
|
4.8
|
41.1
|
1.0
|
|
O
|
B:HOH9211
|
4.8
|
60.9
|
1.0
|
|
N
|
B:GLU969
|
4.9
|
41.5
|
1.0
|
|
CB
|
B:SER933
|
4.9
|
19.9
|
1.0
|
|
CA
|
B:THR970
|
4.9
|
31.8
|
1.0
|
|
CB
|
B:MET968
|
4.9
|
44.0
|
1.0
|
|
CG
|
B:PRO932
|
4.9
|
45.0
|
1.0
|
|
CA
|
B:LEU967
|
4.9
|
35.5
|
1.0
|
|
O
|
B:PHE931
|
5.0
|
29.6
|
1.0
|
|
Sodium binding site 7 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 7 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na3101
b:28.2
occ:1.00
|
OD2
|
C:ASP201
|
2.3
|
34.4
|
1.0
|
|
O
|
C:HOH8881
|
2.3
|
25.6
|
1.0
|
|
O6
|
C:GTZ2001
|
2.4
|
28.1
|
1.0
|
|
O
|
C:PHE601
|
2.5
|
27.8
|
1.0
|
|
OD1
|
C:ASN604
|
2.5
|
23.6
|
1.0
|
|
CG
|
C:ASP201
|
3.3
|
37.1
|
1.0
|
|
C6
|
C:GTZ2001
|
3.5
|
27.9
|
1.0
|
|
CG
|
C:ASN604
|
3.5
|
55.9
|
1.0
|
|
OD1
|
C:ASP201
|
3.6
|
28.9
|
1.0
|
|
C
|
C:PHE601
|
3.7
|
25.6
|
1.0
|
|
ND2
|
C:ASN604
|
3.8
|
26.1
|
1.0
|
|
OH
|
C:TYR100
|
3.8
|
25.8
|
1.0
|
|
O4
|
C:GTZ2001
|
4.1
|
24.0
|
1.0
|
|
C4
|
C:GTZ2001
|
4.1
|
32.2
|
1.0
|
|
NE1
|
C:TRP568
|
4.3
|
22.5
|
1.0
|
|
C5
|
C:GTZ2001
|
4.3
|
23.8
|
1.0
|
|
NE2
|
C:HIS540
|
4.4
|
25.1
|
1.0
|
|
CB
|
C:PHE601
|
4.4
|
25.9
|
1.0
|
|
CA
|
C:CYS602
|
4.4
|
31.1
|
1.0
|
|
O
|
C:HOH8665
|
4.5
|
28.3
|
1.0
|
|
CB
|
C:ASP201
|
4.5
|
35.0
|
1.0
|
|
N
|
C:CYS602
|
4.5
|
24.2
|
1.0
|
|
CA
|
C:PHE601
|
4.6
|
25.8
|
1.0
|
|
CD2
|
C:PHE601
|
4.6
|
33.4
|
1.0
|
|
O
|
C:ASP201
|
4.9
|
22.1
|
1.0
|
|
CZ
|
C:TYR100
|
4.9
|
47.0
|
1.0
|
|
CB
|
C:ASN604
|
4.9
|
24.6
|
1.0
|
|
CE1
|
C:HIS540
|
4.9
|
26.4
|
1.0
|
|
CE2
|
C:TRP568
|
4.9
|
28.4
|
1.0
|
|
Sodium binding site 8 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 8 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na3102
b:22.4
occ:1.00
|
O
|
C:PHE556
|
2.2
|
20.1
|
1.0
|
|
O
|
C:LEU562
|
2.3
|
20.5
|
1.0
|
|
O
|
C:TYR559
|
2.3
|
22.2
|
1.0
|
|
O
|
C:HOH9127
|
2.4
|
34.7
|
1.0
|
|
O
|
C:HOH8989
|
2.8
|
27.1
|
1.0
|
|
O
|
C:PRO560
|
3.2
|
23.2
|
1.0
|
|
C
|
C:PHE556
|
3.4
|
21.2
|
1.0
|
|
C
|
C:LEU562
|
3.4
|
21.0
|
1.0
|
|
C
|
C:TYR559
|
3.4
|
28.2
|
1.0
|
|
C
|
C:PRO560
|
3.6
|
23.1
|
1.0
|
|
CA
|
C:PRO560
|
3.8
|
20.2
|
1.0
|
|
N
|
C:LEU562
|
4.0
|
17.1
|
1.0
|
|
O
|
C:HOH9300
|
4.0
|
59.7
|
1.0
|
|
N
|
C:PRO560
|
4.1
|
20.8
|
1.0
|
|
CA
|
C:PHE556
|
4.1
|
21.4
|
1.0
|
|
CA
|
C:LEU562
|
4.2
|
18.7
|
1.0
|
|
O
|
C:HOH8888
|
4.2
|
22.4
|
1.0
|
|
CB
|
C:LEU562
|
4.3
|
18.2
|
1.0
|
|
N
|
C:GLN563
|
4.3
|
17.4
|
1.0
|
|
N
|
C:ARG557
|
4.4
|
22.4
|
1.0
|
|
CA
|
C:GLN563
|
4.4
|
15.8
|
1.0
|
|
N
|
C:TYR559
|
4.5
|
16.0
|
1.0
|
|
N
|
C:ARG561
|
4.5
|
17.2
|
1.0
|
|
CA
|
C:TYR559
|
4.5
|
12.6
|
1.0
|
|
CG
|
C:GLN563
|
4.6
|
21.3
|
1.0
|
|
CA
|
C:ARG557
|
4.6
|
19.4
|
1.0
|
|
O
|
C:ALA555
|
4.7
|
25.2
|
1.0
|
|
C
|
C:ARG557
|
4.7
|
31.5
|
1.0
|
|
CB
|
C:PHE556
|
4.8
|
28.2
|
1.0
|
|
CD1
|
C:LEU350
|
4.8
|
15.3
|
1.0
|
|
O
|
C:ARG557
|
4.8
|
24.5
|
1.0
|
|
C
|
C:ARG561
|
4.9
|
16.5
|
1.0
|
|
Sodium binding site 9 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 9 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 9 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na3101
b:28.6
occ:1.00
|
O
|
D:HOH8990
|
2.2
|
24.9
|
1.0
|
|
OD2
|
D:ASP201
|
2.4
|
24.1
|
1.0
|
|
O6
|
D:GTZ2001
|
2.5
|
25.2
|
1.0
|
|
OD1
|
D:ASN604
|
2.5
|
25.5
|
1.0
|
|
O
|
D:PHE601
|
2.5
|
21.2
|
1.0
|
|
CE2
|
D:PHE601
|
3.0
|
92.3
|
1.0
|
|
CD2
|
D:PHE601
|
3.2
|
86.9
|
1.0
|
|
CG
|
D:ASP201
|
3.2
|
35.4
|
1.0
|
|
CG
|
D:ASN604
|
3.4
|
28.6
|
1.0
|
|
C6
|
D:GTZ2001
|
3.5
|
13.3
|
1.0
|
|
OD1
|
D:ASP201
|
3.5
|
27.3
|
1.0
|
|
C
|
D:PHE601
|
3.7
|
24.6
|
1.0
|
|
ND2
|
D:ASN604
|
3.7
|
21.9
|
1.0
|
|
OH
|
D:TYR100
|
3.8
|
37.2
|
1.0
|
|
CZ
|
D:PHE601
|
3.9
|
97.0
|
1.0
|
|
C4
|
D:GTZ2001
|
4.0
|
23.5
|
1.0
|
|
O4
|
D:GTZ2001
|
4.1
|
21.6
|
1.0
|
|
NE1
|
D:TRP568
|
4.1
|
25.3
|
1.0
|
|
CG
|
D:PHE601
|
4.1
|
62.4
|
1.0
|
|
C5
|
D:GTZ2001
|
4.2
|
18.8
|
1.0
|
|
CA
|
D:CYS602
|
4.4
|
34.8
|
1.0
|
|
CB
|
D:ASP201
|
4.4
|
23.4
|
1.0
|
|
O
|
D:HOH8777
|
4.4
|
30.4
|
1.0
|
|
N
|
D:CYS602
|
4.5
|
38.2
|
1.0
|
|
NE2
|
D:HIS540
|
4.5
|
31.1
|
1.0
|
|
O
|
D:ASP201
|
4.6
|
24.2
|
1.0
|
|
CA
|
D:PHE601
|
4.7
|
27.3
|
1.0
|
|
CE1
|
D:PHE601
|
4.7
|
89.2
|
1.0
|
|
CE2
|
D:TRP568
|
4.8
|
26.4
|
1.0
|
|
CD1
|
D:PHE601
|
4.8
|
72.0
|
1.0
|
|
C
|
D:CYS602
|
4.8
|
34.4
|
1.0
|
|
CB
|
D:ASN604
|
4.9
|
20.4
|
1.0
|
|
CB
|
D:PHE601
|
4.9
|
33.4
|
1.0
|
|
CZ2
|
D:TRP568
|
4.9
|
31.2
|
1.0
|
|
CZ
|
D:TYR100
|
4.9
|
25.9
|
1.0
|
|
Sodium binding site 10 out
of 11 in 1jz6
Go back to
Sodium Binding Sites List in 1jz6
Sodium binding site 10 out
of 11 in the E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 10 of E. Coli (Lacz) Beta-Galactosidase in Complex with Galacto- Tetrazole within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na3102
b:25.9
occ:1.00
|
O
|
D:LEU562
|
2.2
|
22.9
|
1.0
|
|
O
|
D:HOH9248
|
2.3
|
28.2
|
1.0
|
|
O
|
D:PHE556
|
2.3
|
19.1
|
1.0
|
|
O
|
D:TYR559
|
2.4
|
19.7
|
1.0
|
|
O
|
D:HOH9101
|
2.6
|
28.1
|
1.0
|
|
O
|
D:PRO560
|
3.2
|
25.1
|
1.0
|
|
C
|
D:LEU562
|
3.3
|
29.8
|
1.0
|
|
C
|
D:PHE556
|
3.4
|
24.0
|
1.0
|
|
C
|
D:TYR559
|
3.5
|
23.9
|
1.0
|
|
C
|
D:PRO560
|
3.6
|
20.6
|
1.0
|
|
CA
|
D:PRO560
|
3.8
|
17.9
|
1.0
|
|
O
|
D:HOH8997
|
3.9
|
26.0
|
1.0
|
|
N
|
D:LEU562
|
4.1
|
18.0
|
1.0
|
|
N
|
D:PRO560
|
4.1
|
19.1
|
1.0
|
|
CA
|
D:PHE556
|
4.2
|
16.0
|
1.0
|
|
CA
|
D:LEU562
|
4.2
|
21.0
|
1.0
|
|
N
|
D:GLN563
|
4.2
|
18.9
|
1.0
|
|
CA
|
D:GLN563
|
4.3
|
13.3
|
1.0
|
|
CB
|
D:LEU562
|
4.3
|
20.2
|
1.0
|
|
O
|
D:HOH9348
|
4.3
|
48.4
|
1.0
|
|
N
|
D:ARG557
|
4.5
|
16.9
|
1.0
|
|
CA
|
D:TYR559
|
4.5
|
19.6
|
1.0
|
|
N
|
D:ARG561
|
4.6
|
16.3
|
1.0
|
|
N
|
D:TYR559
|
4.6
|
19.5
|
1.0
|
|
CG
|
D:GLN563
|
4.6
|
23.3
|
1.0
|
|
CB
|
D:PHE556
|
4.6
|
17.8
|
1.0
|
|
CA
|
D:ARG557
|
4.7
|
16.6
|
1.0
|
|
O
|
D:ARG557
|
4.8
|
24.3
|
1.0
|
|
CD1
|
D:LEU350
|
4.8
|
17.5
|
1.0
|
|
C
|
D:ARG557
|
4.8
|
25.7
|
1.0
|
|
C
|
D:ARG561
|
4.9
|
23.3
|
1.0
|
|
CB
|
D:TYR559
|
4.9
|
19.7
|
1.0
|
|
O
|
D:ALA555
|
4.9
|
28.9
|
1.0
|
|
Reference:
D.H.Juers,
T.D.Heightman,
A.Vasella,
J.D.Mccarter,
L.Mackenzie,
S.G.Withers,
B.W.Matthews.
A Structural View of the Action of Escherichia Coli (Lacz) Beta-Galactosidase Biochemistry V. 40 14781 2001.
ISSN: ISSN 0006-2960
PubMed: 11732897
DOI: 10.1021/BI011727I
Page generated: Sun Oct 6 19:11:20 2024
|
