Sodium in the structure of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina (pdb 1jrz)

The binding sites of Sodium atom in the structure of Crystal Structure of ARG402TYR Mutant Flavocytochrome C3 From Shewanella Frigidimarina (pdb code 1jrz). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1jrz structure was solved by C.G.MOWAT, R.MOYSEY, C.S.MILES, D.LEYS, M.K.DOHERTY, P.TAYLOR, M.D.WALKINSHAW, G.A.REID, S.K.CHAPMAN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-2.0 Space group P1211 a (A) 78.072 b (A) 87.906 c (A) 90.163 alpha (°) 90.00 beta (°) 105.03 gamma (°) 90.00 Rfactor (%) 17.6 Rfree (%) 25.5 Sodium Binding Sites: Sodium binding site 1 out of 2 in 1jrz Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1jrz. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His505, A: Thr506, A: Met507, A: Gly508, A: Gly509, A: Gly533, A: Glu534, A: Val535, A: Thr536, A: Gly537, A: Hoh1812, A: Hoh1837, A: Hoh1862, A: Hoh1886, conact list: Atom Atom Distance (A) Na NE2 A:His505 4.77 Na O A:Thr506 2.49 Na CB A:Thr506 4.99 Na OG1 A:Thr506 4.62 Na C A:Thr506 3.62 Na CA A:Thr506 4.77 Na O A:Met507 3.04 Na N A:Met507 4.13 Na C A:Met507 3.25 Na CA A:Met507 3.70 Na O A:Gly508 2.59 Na N A:Gly508 3.63 Na C A:Gly508 3.43 Na CA A:Gly508 4.04 Na N A:Gly509 4.28 Na CA A:Gly509 4.56 Na O A:Gly533 4.81 Na O A:Glu534 2.45 Na CB A:Glu534 4.59 Na C A:Glu534 3.46 Na CG A:Glu534 4.05 Na CA A:Glu534 3.93 Na O A:Val535 4.70 Na N A:Val535 4.48 Na C A:Val535 4.32 Na CA A:Val535 4.74 Na O A:Thr536 2.53 Na N A:Thr536 4.20 Na C A:Thr536 3.63 Na CA A:Thr536 4.51 Na N A:Gly537 4.47 Na CA A:Gly537 4.50 Na O A:Hoh1812 3.46 Na O A:Hoh1837 2.50 Na O A:Hoh1862 4.34 Na O A:Hoh1886 4.06 interactive model: Sodium binding site 2 out of 2 in 1jrz Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Sodium in the PDB 1jrz. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: His505, B: Thr506, B: Met507, B: Gly508, B: Gly509, B: Gly533, B: Glu534, B: Val535, B: Thr536, B: Gly537, B: Hoh1016, B: Hoh1036, B: Hoh1077, B: Hoh1139, conact list: Atom Atom Distance (A) Na NE2 B:His505 4.65 Na O B:Thr506 2.50 Na OG1 B:Thr506 4.70 Na C B:Thr506 3.62 Na CA B:Thr506 4.83 Na O B:Met507 2.96 Na N B:Met507 4.12 Na C B:Met507 3.26 Na CA B:Met507 3.71 Na O B:Gly508 2.61 Na N B:Gly508 3.75 Na C B:Gly508 3.50 Na CA B:Gly508 4.10 Na N B:Gly509 4.41 Na CA B:Gly509 4.63 Na O B:Gly533 4.70 Na O B:Glu534 2.46 Na CB B:Glu534 4.56 Na C B:Glu534 3.41 Na CG B:Glu534 4.01 Na CA B:Glu534 3.88 Na O B:Val535 4.77 Na N B:Val535 4.44 Na C B:Val535 4.41 Na CA B:Val535 4.79 Na O B:Thr536 2.51 Na N B:Thr536 4.20 Na C B:Thr536 3.63 Na CA B:Thr536 4.52 Na N B:Gly537 4.46 Na CA B:Gly537 4.48 Na O B:Hoh1016 3.56 Na O B:Hoh1036 2.50 Na O B:Hoh1077 4.16 Na O B:Hoh1139 4.03 interactive model: