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Sodium in PDB 1jmm: Crystal Structure of the V-Region of Streptococcus Mutans Antigen I/II

Protein crystallography data

The structure of Crystal Structure of the V-Region of Streptococcus Mutans Antigen I/II, PDB code: 1jmm was solved by N.Troffer-Charlier, J.Ogier, D.Moras, J.Cavarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.40
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 124.570, 124.570, 147.692, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 23.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the V-Region of Streptococcus Mutans Antigen I/II (pdb code 1jmm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the V-Region of Streptococcus Mutans Antigen I/II, PDB code: 1jmm:

Sodium binding site 1 out of 1 in 1jmm

Go back to Sodium Binding Sites List in 1jmm
Sodium binding site 1 out of 1 in the Crystal Structure of the V-Region of Streptococcus Mutans Antigen I/II


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the V-Region of Streptococcus Mutans Antigen I/II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na3001

b:22.7
occ:1.00
OG A:SER697 2.2 19.7 1.0
O A:HOH1237 2.2 26.4 1.0
O A:SER697 2.3 16.7 1.0
OD1 A:ASN699 2.4 18.9 1.0
O A:HOH1013 2.5 18.6 1.0
OE1 A:GLU706 2.8 23.9 1.0
CB A:SER697 3.1 18.0 1.0
C A:SER697 3.3 21.0 1.0
O A:HOH1149 3.5 35.5 1.0
CD A:GLU706 3.6 29.6 1.0
OE2 A:GLU706 3.6 27.0 1.0
CG A:ASN699 3.6 19.7 1.0
CA A:SER697 3.7 20.8 1.0
O A:TRP816 3.9 20.8 1.0
N A:ASN699 4.4 18.6 1.0
OD2 A:ASP760 4.4 16.2 1.0
N A:LEU698 4.5 18.8 1.0
CB A:ASN699 4.5 18.8 1.0
ND2 A:ASN699 4.5 16.3 1.0
OD1 A:ASP760 4.7 22.1 1.0
O A:HOH1007 4.8 28.2 1.0
O A:HOH1089 4.8 28.0 1.0
O A:ALA696 4.9 18.9 1.0
CA A:LEU698 5.0 20.4 1.0
CG A:ASP760 5.0 19.1 1.0
CG A:GLU706 5.0 23.4 1.0

Reference:

N.Troffer-Charlier, J.Ogier, D.Moras, J.Cavarelli. Crystal Structure of the V-Region of Streptococcus Mutans Antigen I/II at 2.4 A Resolution Suggests A Sugar Preformed Binding Site J.Mol.Biol. V. 318 179 2002.
ISSN: ISSN 0022-2836
PubMed: 12054777
DOI: 10.1016/S0022-2836(02)00025-6
Page generated: Thu Oct 29 03:48:31 2020

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