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Sodium in PDB 1ix0: I59A-3SS Human Lysozyme

Enzymatic activity of I59A-3SS Human Lysozyme

All present enzymatic activity of I59A-3SS Human Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of I59A-3SS Human Lysozyme, PDB code: 1ix0 was solved by K.Takano, Y.Yamagata, K.Yutani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.830, 60.880, 32.100, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the I59A-3SS Human Lysozyme (pdb code 1ix0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the I59A-3SS Human Lysozyme, PDB code: 1ix0:

Sodium binding site 1 out of 1 in 1ix0

Go back to Sodium Binding Sites List in 1ix0
Sodium binding site 1 out of 1 in the I59A-3SS Human Lysozyme


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of I59A-3SS Human Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na601

b:28.7
occ:1.00
O A:HOH312 2.3 19.2 1.0
O A:HOH154 2.4 4.7 1.0
O A:HOH174 4.4 14.4 1.0

Reference:

K.Takano, Y.Yamagata, K.Yutani. Buried Water Molecules Contribute to the Conformational Stability of A Protein Protein Eng. V. 16 5 2003.
ISSN: ISSN 0269-2139
PubMed: 12646687
DOI: 10.1093/PROENG/GZG001
Page generated: Tue Dec 15 05:25:54 2020

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