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Sodium in PDB 1in0: Yajq Protein (HI1034)

Protein crystallography data

The structure of Yajq Protein (HI1034), PDB code: 1in0 was solved by A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.14
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.800, 62.800, 194.500, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / n/a

Other elements in 1in0:

The structure of Yajq Protein (HI1034) also contains other interesting chemical elements:

Mercury (Hg) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Yajq Protein (HI1034) (pdb code 1in0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Yajq Protein (HI1034), PDB code: 1in0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 1in0

Go back to Sodium Binding Sites List in 1in0
Sodium binding site 1 out of 2 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Yajq Protein (HI1034) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:34.7
occ:1.00
O B:HOH207 2.2 23.6 1.0
O B:HOH205 2.4 21.7 1.0
O B:ASP31 2.5 35.0 1.0
C B:ASP31 3.5 29.9 1.0
CA B:ASP31 3.8 28.1 1.0
NE2 B:GLN57 3.9 34.4 1.0
CB B:ASP31 3.9 21.3 1.0
O B:HOH209 4.2 26.1 1.0
O B:HOH216 4.6 32.0 1.0
CG2 B:VAL35 4.6 22.7 1.0
N B:PHE32 4.7 25.9 1.0

Sodium binding site 2 out of 2 in 1in0

Go back to Sodium Binding Sites List in 1in0
Sodium binding site 2 out of 2 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Yajq Protein (HI1034) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na203

b:31.2
occ:1.00
O A:ASP31 2.2 28.5 1.0
O A:HOH207 2.5 25.4 1.0
O A:HOH213 2.6 30.6 1.0
C A:ASP31 3.3 30.8 1.0
CA A:ASP31 3.7 20.1 1.0
CB A:ASP31 4.1 30.1 1.0
O A:HOH215 4.2 31.3 1.0
OE1 A:GLN57 4.2 27.9 1.0
CG2 A:VAL35 4.4 26.4 1.0
O A:HOH279 4.4 48.8 1.0
O A:HOH217 4.5 31.7 1.0
N A:PHE32 4.5 22.1 1.0
CA A:PHE32 4.9 25.8 1.0

Reference:

A.Teplyakov, G.Obmolova, N.Bir, P.Reddy, A.J.Howard, G.L.Gilliland. Crystal Structure of the Yajq Protein From Haemophilus Influenzae Reveals A Tandem of Rnp-Like Domains J.Struct.Funct.Genom. V. 4 1 2003.
ISSN: ISSN 1345-711X
PubMed: 12943362
DOI: 10.1023/A:1024620416876
Page generated: Tue Dec 15 05:25:46 2020

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