Sodium in PDB 1in0: Yajq Protein (HI1034)

The structure of Yajq Protein (HI1034), PDB code: 1in0 was solved by A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.14
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	62.800, 62.800, 194.500, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / n/a

The structure of Yajq Protein (HI1034) also contains other interesting chemical elements:

Mercury

(Hg)

4 atoms

The binding sites of Sodium atom in the Yajq Protein (HI1034) (pdb code 1in0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Yajq Protein (HI1034), PDB code: 1in0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Yajq Protein (HI1034) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:34.7 occ:1.00 O B:HOH207 2.2 23.6 1.0 O B:HOH205 2.4 21.7 1.0 O B:ASP31 2.5 35.0 1.0 C B:ASP31 3.5 29.9 1.0 CA B:ASP31 3.8 28.1 1.0 NE2 B:GLN57 3.9 34.4 1.0 CB B:ASP31 3.9 21.3 1.0 O B:HOH209 4.2 26.1 1.0 O B:HOH216 4.6 32.0 1.0 CG2 B:VAL35 4.6 22.7 1.0 N B:PHE32 4.7 25.9 1.0

Sodium binding site 2 out of 2 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Yajq Protein (HI1034) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:31.2 occ:1.00 O A:ASP31 2.2 28.5 1.0 O A:HOH207 2.5 25.4 1.0 O A:HOH213 2.6 30.6 1.0 C A:ASP31 3.3 30.8 1.0 CA A:ASP31 3.7 20.1 1.0 CB A:ASP31 4.1 30.1 1.0 O A:HOH215 4.2 31.3 1.0 OE1 A:GLN57 4.2 27.9 1.0 CG2 A:VAL35 4.4 26.4 1.0 O A:HOH279 4.4 48.8 1.0 O A:HOH217 4.5 31.7 1.0 N A:PHE32 4.5 22.1 1.0 CA A:PHE32 4.9 25.8 1.0

A.Teplyakov, G.Obmolova, N.Bir, P.Reddy, A.J.Howard, G.L.Gilliland. Crystal Structure of the Yajq Protein From Haemophilus Influenzae Reveals A Tandem of Rnp-Like Domains J.Struct.Funct.Genom. V. 4 1 2003.
ISSN: ISSN 1345-711X
PubMed: 12943362
DOI: 10.1023/A:1024620416876