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Sodium in PDB 1iee: Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method

Enzymatic activity of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method

All present enzymatic activity of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method:
3.2.1.17;

Protein crystallography data

The structure of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method, PDB code: 1iee was solved by C.Sauter, F.Otalora, J.-A.Gavira, O.Vidal, R.Giege, J.-M.Garcia-Ruiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.00 / 0.94
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.061, 77.061, 37.223, 90.00, 90.00, 90.00
R / Rfree (%) 12.3 / 15.1

Other elements in 1iee:

The structure of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method (pdb code 1iee). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method, PDB code: 1iee:

Sodium binding site 1 out of 1 in 1iee

Go back to Sodium Binding Sites List in 1iee
Sodium binding site 1 out of 1 in the Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Tetragonal Hen Egg White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na200

b:10.0
occ:0.48
 O A:SER60 1.8 11.3 0.5
O A:HOH1226 1.9 13.1 0.5
OG A:SER72 1.9 12.2 0.5
O A:SER60 2.3 10.2 0.5
O A:HOH1222 2.4 14.0 0.5
O A:ARG73 2.4 13.4 0.5
O A:HOH1225 2.4 10.6 0.5
O A:HOH1221 2.5 11.9 0.5
CB A:SER72 2.5 12.3 0.5
OG A:SER72 2.5 11.6 0.5
O A:CYS64 2.6 10.8 1.0
C A:SER60 2.8 9.5 0.5
CA A:SER72 3.0 11.7 0.5
CB A:SER72 3.3 12.8 0.5
C A:ARG73 3.5 13.3 0.5
C A:SER60 3.5 8.6 0.5
N A:ARG61 3.6 9.8 0.5
C A:CYS64 3.7 10.4 1.0
CA A:ARG61 3.7 11.0 0.5
C A:ARG61 3.7 12.2 0.5
O A:ARG61 3.7 12.9 0.5
C A:SER72 3.8 11.2 0.5
CA A:SER60 3.8 9.5 0.5
N A:ARG73 3.8 11.8 0.5
N A:ARG73 3.9 13.9 0.5
CA A:SER60 4.0 8.8 0.5
CA A:ASN65 4.1 10.4 1.0
C A:SER72 4.2 13.8 0.5
N A:SER72 4.2 10.8 0.5
CB A:SER60 4.2 7.7 0.5
N A:ASN74 4.2 10.9 0.5
CB A:SER60 4.3 10.3 0.5
N A:ASN65 4.3 10.0 1.0
O A:HOH1228 4.4 22.8 0.5
CA A:ARG73 4.4 14.5 0.5
N A:ASN74 4.4 13.1 0.5
CA A:SER72 4.4 12.5 0.5
N A:TRP62 4.5 12.4 0.5
CB A:THR69 4.5 10.5 0.5
CA A:ASN74 4.5 11.1 0.5
N A:ARG61 4.6 9.6 0.5
O A:HOH1227 4.6 14.8 0.5
CB A:ASN74 4.6 12.4 0.5
C A:ARG61 4.6 11.4 0.5
N A:CYS64 4.6 11.4 1.0
O A:SER72 4.7 14.1 0.5
OD1 A:ASN65 4.7 15.0 1.0
O A:ARG61 4.7 12.4 0.5
CL A:CL203 4.7 10.7 0.5
N A:ASP66 4.7 9.3 1.0
O A:SER72 4.7 13.3 0.5
O A:THR69 4.8 10.6 0.5
CB A:THR69 4.8 13.3 0.5
CA A:CYS64 4.8 10.6 1.0
CA A:ASN74 4.8 10.0 0.5
CA A:ARG61 4.8 11.4 0.5
N A:TRP62 4.9 12.2 0.5
O A:HOH1223 4.9 28.8 0.5
CG2 A:THR69 4.9 14.6 0.5
CB A:ASN65 4.9 12.9 1.0
OG A:SER60 5.0 6.9 0.5
C A:ASN65 5.0 9.2 1.0
CA A:ARG73 5.0 11.9 0.5

Reference:

C.Sauter, F.Otalora, J.A.Gavira, O.Vidal, R.Giege, J.M.Garcia-Ruiz. Structure of Tetragonal Hen Egg-White Lysozyme at 0.94 A From Crystals Grown By the Counter-Diffusion Method. Acta Crystallogr.,Sect.D V. 57 1119 2001.
ISSN: ISSN 0907-4449
PubMed: 11468395
DOI: 10.1107/S0907444901008873
Page generated: Tue Dec 15 05:25:44 2020

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