Sodium in the structure of Structure of Tetragonal Hen Egg White Lysozyme At 0.94 A From Crystals Grown By the Counter-Diffusion Method (pdb 1iee)

The binding sites of Sodium atom in the structure of Structure of Tetragonal Hen Egg White Lysozyme At 0.94 A From Crystals Grown By the Counter-Diffusion Method (pdb code 1iee). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1iee structure was solved by C.SAUTER, F.OTALORA, J.-A.GAVIRA, O.VIDAL, R.GIEGE, J.-M.GARCIA-RUIZ, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 31.0-0.9 Space group P43212 a (A) 77.061 b (A) 77.061 c (A) 37.223 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 12.3 Rfree (%) 15.1 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1iee Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1iee. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ser60, A: Arg61, A: Trp62, A: Cys64, A: Asn65, A: Asp66, A: Thr69, A: Ser72, A: Arg73, A: Asn74, A: Cl203, A: Hoh1221, A: Hoh1222, A: Hoh1223, A: Hoh1225, A: Hoh1226, A: Hoh1227, A: Hoh1228, conact list: Atom Atom Distance (A) Na O A:Ser60 2.34 Na O A:Ser60 1.82 Na CB A:Ser60 4.20 Na CB A:Ser60 4.35 Na OG A:Ser60 4.96 Na C A:Ser60 3.47 Na C A:Ser60 2.85 Na CA A:Ser60 4.02 Na CA A:Ser60 3.79 Na O A:Arg61 4.68 Na O A:Arg61 3.73 Na N A:Arg61 4.57 Na N A:Arg61 3.65 Na C A:Arg61 4.61 Na C A:Arg61 3.73 Na CA A:Arg61 4.84 Na CA A:Arg61 3.71 Na N A:Trp62 4.86 Na N A:Trp62 4.47 Na O A:Cys64 2.64 Na N A:Cys64 4.64 Na C A:Cys64 3.71 Na CA A:Cys64 4.84 Na N A:Asn65 4.35 Na CB A:Asn65 4.94 Na C A:Asn65 4.99 Na OD1 A:Asn65 4.66 Na CA A:Asn65 4.07 Na N A:Asp66 4.73 Na O A:Thr69 4.76 Na CB A:Thr69 4.80 Na CB A:Thr69 4.48 Na CG2 A:Thr69 4.93 Na O A:Ser72 4.66 Na O A:Ser72 4.73 Na N A:Ser72 4.19 Na CB A:Ser72 3.31 Na CB A:Ser72 2.47 Na OG A:Ser72 2.55 Na OG A:Ser72 1.89 Na C A:Ser72 4.16 Na C A:Ser72 3.75 Na CA A:Ser72 4.38 Na CA A:Ser72 2.98 Na O A:Arg73 2.40 Na N A:Arg73 3.93 Na N A:Arg73 3.81 Na C A:Arg73 3.47 Na CA A:Arg73 4.36 Na CA A:Arg73 4.99 Na N A:Asn74 4.37 Na N A:Asn74 4.22 Na CB A:Asn74 4.60 Na CA A:Asn74 4.53 Na CA A:Asn74 4.84 Na CL A:Cl203 4.72 Na O A:Hoh1221 2.46 Na O A:Hoh1222 2.40 Na O A:Hoh1223 4.87 Na O A:Hoh1225 2.43 Na O A:Hoh1226 1.87 Na O A:Hoh1227 4.57 Na O A:Hoh1228 4.36 interactive model: