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Sodium in the structure of C-Terminal Domain of Gelatinase A (pdb 1gen)

The binding sites of Sodium atom in the structure of C-Terminal Domain of Gelatinase A (pdb code 1gen). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 1gen structure was solved by A.M.LIBSON, A.G.GITTIS, I.E.COLLIER, B.L.MARMER, G.G.GOLDBERG, E.E.LATTMAN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)6.5-2.1
Space groupP212121
a (A)57.900
b (A)77.400
c (A)53.400
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.8
Rfree (%)26

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 1gen

Sodium binding site 1 out of 1 in 1gen
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 1gen
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1gen. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ile478, A: Ala479, A: Val523, A: Tyr524, A: Ala571, A: Phe572, A: Val620, A: Val621, A: Cl303, A: Hoh317,

conact list:

AtomAtomDistance (A)
NaO A:Ile4782.39
NaN A:Ile4784.37
NaH A:Ile4783.57
NaC A:Ile4783.60
NaCA A:Ile4784.65
NaN A:Ala4794.40
NaCB A:Ala4794.43
NaCA A:Ala4794.35
NaO A:Val5232.01
NaN A:Val5234.10
NaCB A:Val5234.65
NaCG2 A:Val5234.95
NaH A:Val5233.31
NaC A:Val5233.25
NaCA A:Val5234.28
NaN A:Tyr5244.15
NaCB A:Tyr5244.30
NaCA A:Tyr5244.19
NaO A:Ala5712.13
NaN A:Ala5714.22
NaH A:Ala5713.42
NaC A:Ala5713.40
NaCA A:Ala5714.40
NaN A:Phe5724.33
NaCB A:Phe5724.33
NaCA A:Phe5724.31
NaO A:Val6202.34
NaN A:Val6204.01
NaCB A:Val6204.97
NaH A:Val6203.12
NaC A:Val6203.57
NaCA A:Val6204.43
NaN A:Val6214.49
NaCB A:Val6214.81
NaCA A:Val6214.54
NaCL A:Cl3032.77
NaO A:Hoh3172.28
NaH1 A:Hoh3172.59
NaH2 A:Hoh3173.18

interactive model:

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