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Sodium in PDB 1g8f: Atp Sulfurylase From S. Cerevisiae

Enzymatic activity of Atp Sulfurylase From S. Cerevisiae

All present enzymatic activity of Atp Sulfurylase From S. Cerevisiae:
2.7.7.4;

Protein crystallography data

The structure of Atp Sulfurylase From S. Cerevisiae, PDB code: 1g8f was solved by T.C.Ullrich, M.Blaesse, R.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.68 / 1.95
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 187.094, 187.094, 115.999, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 23.1

Other elements in 1g8f:

The structure of Atp Sulfurylase From S. Cerevisiae also contains other interesting chemical elements:

Cadmium (Cd) 5 atoms
Magnesium (Mg) 1 atom
Calcium (Ca) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Atp Sulfurylase From S. Cerevisiae (pdb code 1g8f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Atp Sulfurylase From S. Cerevisiae, PDB code: 1g8f:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 1g8f

Go back to Sodium Binding Sites List in 1g8f
Sodium binding site 1 out of 2 in the Atp Sulfurylase From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Atp Sulfurylase From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na518

b:32.5
occ:1.00
O A:HOH1067 3.9 58.4 1.0
O A:ASP107 4.2 43.0 1.0
CB A:ASP108 4.7 49.9 1.0
O A:HOH766 4.7 60.4 1.0

Sodium binding site 2 out of 2 in 1g8f

Go back to Sodium Binding Sites List in 1g8f
Sodium binding site 2 out of 2 in the Atp Sulfurylase From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Atp Sulfurylase From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na522

b:42.9
occ:1.00
OD2 A:ASP309 2.5 36.5 1.0
OD1 A:ASP309 2.8 34.7 1.0
CG A:ASP309 2.9 34.8 1.0
CB A:ASP309 4.3 31.1 1.0
CA A:GLY306 4.4 37.5 1.0
N A:GLY306 4.5 38.2 1.0
NH2 A:ARG134 4.5 38.9 1.0
O A:HOH678 4.5 41.9 1.0
NH1 A:ARG134 4.9 36.5 1.0

Reference:

T.C.Ullrich, M.Blaesse, R.Huber. Crystal Structure of Atp Sulfurylase From Saccharomyces Cerevisiae, A Key Enzyme in Sulfate Activation. Embo J. V. 20 316 2001.
ISSN: ISSN 0261-4189
PubMed: 11157739
DOI: 10.1093/EMBOJ/20.3.316
Page generated: Tue Dec 15 05:24:05 2020

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