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Sodium in PDB 1g60: Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis)

Enzymatic activity of Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis)

All present enzymatic activity of Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis):
2.1.1.72;

Protein crystallography data

The structure of Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis), PDB code: 1g60 was solved by J.Osipiuk, M.A.Walsh, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.75 / 1.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.818, 98.699, 50.894, 90.00, 101.93, 90.00
R / Rfree (%) 19.8 / 22.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis) (pdb code 1g60). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis), PDB code: 1g60:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 1g60

Go back to Sodium Binding Sites List in 1g60
Sodium binding site 1 out of 2 in the Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:39.4
occ:1.00
O B:HOH569 3.7 35.2 1.0
CD2 A:PHE77 3.7 19.5 1.0
CE2 A:PHE77 3.8 19.2 1.0
CD2 B:PHE93 3.8 18.6 1.0
CG A:PHE77 3.9 18.2 1.0
CZ A:PHE77 4.0 21.4 1.0
CD1 A:PHE77 4.1 19.3 1.0
O A:HOH560 4.1 34.5 1.0
CE1 A:PHE77 4.1 20.3 1.0
CE2 B:PHE93 4.5 19.2 1.0
CB B:PHE93 4.6 18.0 1.0
CG B:PHE93 4.6 18.6 1.0
CB A:PHE77 4.6 17.7 1.0
O B:HOH652 4.8 51.5 1.0
O A:HOH507 4.9 22.9 1.0

Sodium binding site 2 out of 2 in 1g60

Go back to Sodium Binding Sites List in 1g60
Sodium binding site 2 out of 2 in the Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Methyltransferase Mboiia (Moraxella Bovis) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na402

b:47.0
occ:1.00
CD1 A:PHE93 3.6 21.1 1.0
O A:HOH585 3.7 37.0 1.0
O B:HOH557 3.7 32.6 1.0
CD1 B:PHE77 3.8 19.6 1.0
CG B:PHE77 3.9 19.2 1.0
CE1 B:PHE77 4.0 20.5 1.0
CD2 B:PHE77 4.0 18.7 1.0
CZ B:PHE77 4.1 20.3 1.0
CE2 B:PHE77 4.2 20.1 1.0
CE1 A:PHE93 4.3 21.6 1.0
CG A:PHE93 4.4 21.1 1.0
CB A:PHE93 4.5 20.5 1.0
CB B:PHE77 4.5 17.7 1.0
O B:HOH515 4.8 22.2 1.0

Reference:

J.Osipiuk, M.A.Walsh, A.Joachimiak. Crystal Structure of Mboiia Methyltransferase. Nucleic Acids Res. V. 31 5440 2003.
ISSN: ISSN 0305-1048
PubMed: 12954781
DOI: 10.1093/NAR/GKG713
Page generated: Tue Dec 15 05:24:04 2020

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