Sodium in PDB 1f6o: Crystal Structure of the Human Aag Dna Repair Glycosylase Complexed with Dna

All present enzymatic activity of Crystal Structure of the Human Aag Dna Repair Glycosylase Complexed with Dna:
3.2.2.20;

The structure of Crystal Structure of the Human Aag Dna Repair Glycosylase Complexed with Dna, PDB code: 1f6o was solved by A.Y.Lau, M.D.Wyatt, B.J.Glassner, L.D.Samson, T.Ellenberger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	500.00 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.750, 57.100, 128.450, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 28.2

The binding sites of Sodium atom in the Crystal Structure of the Human Aag Dna Repair Glycosylase Complexed with Dna (pdb code 1f6o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human Aag Dna Repair Glycosylase Complexed with Dna, PDB code: 1f6o:

Sodium binding site 1 out of 1 in the Crystal Structure of the Human Aag Dna Repair Glycosylase Complexed with Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human Aag Dna Repair Glycosylase Complexed with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1001 b:32.5 occ:1.00 O A:SER172 2.5 19.5 1.0 OG A:SER171 2.6 19.3 1.0 O A:MET149 2.7 25.0 1.0 O A:GLY174 2.7 27.4 1.0 O A:ALA177 2.7 22.5 1.0 O A:HOH1005 2.9 29.4 1.0 C A:GLY174 3.5 28.0 1.0 C A:SER172 3.6 22.5 1.0 N A:SER172 3.6 20.0 1.0 C A:ALA177 3.8 22.1 1.0 C A:MET149 3.8 24.9 1.0 N A:ALA177 3.8 23.2 1.0 CB A:SER171 3.9 15.4 1.0 O A:MET151 3.9 28.0 1.0 N A:GLY176 4.0 30.6 1.0 CA A:ASP175 4.1 31.4 1.0 N A:ASP175 4.1 29.7 1.0 C A:SER171 4.2 18.6 1.0 CA A:SER171 4.2 16.1 1.0 CA A:ALA177 4.2 22.7 1.0 C A:GLN173 4.3 23.3 1.0 N A:GLY174 4.3 26.1 1.0 CA A:SER172 4.3 20.6 1.0 O A:GLN173 4.4 20.8 1.0 CA A:GLY174 4.4 26.2 1.0 C A:ASP175 4.5 31.3 1.0 CA A:MET149 4.6 23.3 1.0 CB A:ALA177 4.6 21.5 1.0 N A:GLN173 4.6 25.8 1.0 C A:GLY176 4.7 26.8 1.0 OG A:SER172 4.7 21.3 1.0 N A:PHE150 4.8 24.9 1.0 CA A:GLN173 4.8 25.2 1.0 CA A:PHE150 4.9 26.0 1.0 CA A:GLY176 4.9 28.2 1.0 N A:CYS178 4.9 21.6 1.0 O A:HOH1069 4.9 47.5 1.0 N A:MET151 5.0 26.5 1.0

A.Y.Lau, M.D.Wyatt, B.J.Glassner, L.D.Samson, T.Ellenberger. Molecular Basis For Discriminating Between Normal and Damaged Bases By the Human Alkyladenine Glycosylase, Aag. Proc.Natl.Acad.Sci.Usa V. 97 13573 2000.
ISSN: ISSN 0027-8424
PubMed: 11106395
DOI: 10.1073/PNAS.97.25.13573