Sodium in PDB 1d11: Interactions Between An Anthracycline Antibiotic and Dna Molecular Structure of Daunomycin Complexed to D(Cpgptpapcpg) at 1.2-Angstroms Resolution

The structure of Interactions Between An Anthracycline Antibiotic and Dna Molecular Structure of Daunomycin Complexed to D(Cpgptpapcpg) at 1.2-Angstroms Resolution, PDB code: 1d11 was solved by A.H.-J.Wang, G.Ughetto, G.J.Quigley, A.Rich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.18
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	27.860, 27.860, 52.720, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Sodium atom in the Interactions Between An Anthracycline Antibiotic and Dna Molecular Structure of Daunomycin Complexed to D(Cpgptpapcpg) at 1.2-Angstroms Resolution (pdb code 1d11). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Interactions Between An Anthracycline Antibiotic and Dna Molecular Structure of Daunomycin Complexed to D(Cpgptpapcpg) at 1.2-Angstroms Resolution, PDB code: 1d11:

Sodium binding site 1 out of 1 in the Interactions Between An Anthracycline Antibiotic and Dna Molecular Structure of Daunomycin Complexed to D(Cpgptpapcpg) at 1.2-Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Interactions Between An Anthracycline Antibiotic and Dna Molecular Structure of Daunomycin Complexed to D(Cpgptpapcpg) at 1.2-Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na8 b:27.8 occ:1.00 O A:HOH11 2.7 46.5 1.0 O A:HOH9 2.9 24.8 1.0 O A:HOH10 3.0 21.6 1.0 O A:HOH34 4.2 31.8 1.0 O A:HOH71 4.6 46.9 1.0 O A:HOH62 4.7 45.4 1.0 O A:HOH70 4.8 46.4 1.0

A.H.Wang, G.Ughetto, G.J.Quigley, A.Rich. Interactions Between An Anthracycline Antibiotic and Dna: Molecular Structure of Daunomycin Complexed to D(Cpgptpapcpg) at 1.2-A Resolution. Biochemistry V. 26 1152 1987.
ISSN: ISSN 0006-2960
PubMed: 3567161
DOI: 10.1021/BI00378A025