Sodium in PDB 1c9o: Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp

The structure of Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp, PDB code: 1c9o was solved by U.Mueller, D.Perl, F.X.Schmid, U.Heinemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.17
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	76.995, 76.995, 47.070, 90.00, 90.00, 90.00
R / Rfree (%)	12.4 / 17.9

The binding sites of Sodium atom in the Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp (pdb code 1c9o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp, PDB code: 1c9o:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp within 5.0Å range: probe atom residue distance (Å) B Occ A:Na101 b:18.2 occ:1.00 O A:VAL20 2.4 13.2 1.0 O A:HOH1010 2.4 12.4 1.0 O A:GLY23 2.4 12.4 1.0 O A:HOH1158 2.4 37.4 1.0 O A:HOH1157 2.5 42.0 1.0 O A:HOH1134 2.6 43.8 1.0 O A:HOH1044 3.3 30.1 1.0 C A:VAL20 3.5 12.6 1.0 C A:GLY23 3.6 10.3 1.0 N A:GLY23 3.7 12.3 1.0 N A:VAL20 4.0 11.6 1.0 N A:GLY22 4.1 12.5 1.0 CA A:GLY23 4.3 12.3 1.0 O A:HOH1096 4.3 30.2 1.0 CA A:VAL20 4.3 12.8 1.0 N A:GLU21 4.5 12.1 1.0 CA A:GLU21 4.5 12.5 1.0 O A:HOH1046 4.6 30.2 1.0 C A:GLY22 4.6 12.9 1.0 C A:GLU21 4.6 11.0 1.0 OD1 A:ASP25 4.7 13.4 1.0 N A:SER24 4.7 10.9 1.0 CA A:GLY22 4.8 13.2 1.0 CB A:VAL20 4.8 11.1 1.0 O A:HOH1251 4.9 41.1 0.5 CA A:SER24 5.0 11.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure Analysis of the Bacillus Caldolyticus Cold Shock Protein Bc-Csp within 5.0Å range: probe atom residue distance (Å) B Occ B:Na102 b:25.1 occ:1.00 O B:VAL20 2.4 30.5 1.0 O B:GLY23 2.4 23.6 1.0 O B:HOH1034 2.4 19.0 1.0 O B:HOH1188 2.5 48.1 1.0 O B:HOH1269 2.5 35.9 0.5 C B:VAL20 3.6 26.5 1.0 C B:GLY23 3.6 22.8 1.0 N B:GLY23 3.8 29.9 1.0 CG B:GLU19 4.0 20.7 0.5 N B:VAL20 4.0 19.6 1.0 N B:GLY22 4.1 38.0 1.0 CA B:GLY23 4.3 29.6 1.0 OE2 B:GLU19 4.4 30.1 0.5 CA B:VAL20 4.4 23.1 1.0 CA B:GLU21 4.5 31.5 1.0 N B:GLU21 4.5 29.3 1.0 C B:GLU21 4.5 34.1 1.0 CG2 B:VAL20 4.6 32.9 1.0 OD1 B:ASP25 4.6 16.4 1.0 N B:SER24 4.6 19.4 1.0 CD B:GLU19 4.8 23.1 0.5 C B:GLY22 4.8 37.0 1.0 C B:SER24 4.8 14.5 1.0 CA B:SER24 4.9 15.8 1.0 CA B:GLY22 4.9 37.4 1.0 O B:HOH1129 5.0 40.9 1.0

U.Mueller, D.Perl, F.X.Schmid, U.Heinemann. Thermal Stability and Atomic-Resolution Crystal Structure of the Bacillus Caldolyticus Cold Shock Protein. J.Mol.Biol. V. 297 975 2000.
ISSN: ISSN 0022-2836
PubMed: 10736231
DOI: 10.1006/JMBI.2000.3602