Sodium in PDB 1c1x: L-Phenylalanine Dehydrogenase Structure in Ternary Complex with Nad+ and L-3-Phenyllactate

The structure of L-Phenylalanine Dehydrogenase Structure in Ternary Complex with Nad+ and L-3-Phenyllactate, PDB code: 1c1x was solved by J.L.Vanhooke, J.B.Thoden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.600, 110.400, 113.400, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of L-Phenylalanine Dehydrogenase Structure in Ternary Complex with Nad+ and L-3-Phenyllactate also contains other interesting chemical elements:

Potassium

(K)

4 atoms

The binding sites of Sodium atom in the L-Phenylalanine Dehydrogenase Structure in Ternary Complex with Nad+ and L-3-Phenyllactate (pdb code 1c1x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the L-Phenylalanine Dehydrogenase Structure in Ternary Complex with Nad+ and L-3-Phenyllactate, PDB code: 1c1x:

Sodium binding site 1 out of 1 in the L-Phenylalanine Dehydrogenase Structure in Ternary Complex with Nad+ and L-3-Phenyllactate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of L-Phenylalanine Dehydrogenase Structure in Ternary Complex with Nad+ and L-3-Phenyllactate within 5.0Å range: probe atom residue distance (Å) B Occ A:Na855 b:17.2 occ:1.00 OD1 A:ASP125 2.6 19.5 1.0 O A:ASN120 2.8 21.0 1.0 NE A:ARG87 3.3 24.8 1.0 O A:HOH1289 3.5 33.7 1.0 NH2 A:ARG87 3.5 30.1 1.0 CZ2 A:TRP95 3.5 17.8 1.0 CG A:ASP125 3.6 21.4 1.0 C A:ASN120 3.6 14.2 1.0 ND2 A:ASN122 3.7 25.6 1.0 CZ A:ARG87 3.8 57.9 1.0 CE2 A:TRP95 3.9 15.2 1.0 CA A:THR121 3.9 12.0 1.0 NE1 A:TRP95 3.9 16.2 1.0 OD2 A:ASP125 3.9 18.5 1.0 N A:THR121 4.1 13.3 1.0 CG A:ASN122 4.2 20.9 1.0 CH2 A:TRP95 4.3 17.9 1.0 N A:ASN122 4.3 18.2 1.0 CD A:ARG87 4.4 22.6 1.0 C A:THR121 4.4 23.9 1.0 O A:HOH1895 4.5 43.4 1.0 OD1 A:ASN122 4.6 25.1 1.0 CA A:ASN120 4.6 14.1 1.0 CB A:THR121 4.9 16.7 1.0 CB A:ASP125 4.9 15.7 1.0 CD2 A:TRP95 4.9 15.2 1.0 CG A:ARG87 5.0 28.0 1.0 CG2 A:THR121 5.0 16.7 1.0 CD1 A:TRP95 5.0 13.1 1.0

N.M.Brunhuber, J.B.Thoden, J.S.Blanchard, J.L.Vanhooke. Rhodococcus L-Phenylalanine Dehydrogenase: Kinetics, Mechanism, and Structural Basis For Catalytic Specificity. Biochemistry V. 39 9174 2000.
ISSN: ISSN 0006-2960
PubMed: 10924111
DOI: 10.1021/BI000494C