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Sodium in PDB 1bph: Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11

Protein crystallography data

The structure of Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11, PDB code: 1bph was solved by O.Gursky, J.Badger, Y.Li, D.L.D.Caspar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.00
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 78.900, 78.900, 78.900, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1bph:

The structure of Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11 (pdb code 1bph). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11, PDB code: 1bph:

Sodium binding site 1 out of 1 in 1bph

Go back to Sodium Binding Sites List in 1bph
Sodium binding site 1 out of 1 in the Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na88

b:13.2
occ:0.50
O A:VAL10 2.2 18.3 1.0
O A:GLN5 2.3 20.7 1.0
O A:HOH102 2.3 14.6 0.5
O A:HOH100 2.3 17.8 0.5
OG A:SER9 2.8 34.9 1.0
C A:VAL10 3.1 17.9 1.0
CB A:SER9 3.3 22.9 1.0
C A:GLN5 3.4 16.8 1.0
N A:VAL10 3.4 17.7 1.0
C A:SER9 3.5 29.3 1.0
O A:HOH98 3.7 34.4 0.5
OE1 A:GLN5 3.8 39.6 1.0
CA A:GLN5 3.9 19.9 1.0
CA A:VAL10 3.9 20.9 1.0
CA A:SER9 3.9 22.6 1.0
O A:SER9 4.1 15.3 1.0
N A:CYS11 4.1 17.3 1.0
NE2 A:GLN15 4.3 27.7 0.5
CB A:GLN5 4.4 18.5 1.0
CA A:CYS11 4.4 12.1 1.0
N A:CYS6 4.5 19.9 1.0
N A:SER9 4.7 25.1 1.0
CD A:GLN5 4.7 50.0 1.0
CB A:VAL10 4.8 24.8 1.0
O A:GLU4 4.8 30.0 1.0
CA A:CYS6 4.9 14.1 1.0

Reference:

O.Gursky, J.Badger, Y.Li, D.L.Caspar. Conformational Changes in Cubic Insulin Crystals in the pH Range 7-11. Biophys.J. V. 63 1210 1992.
ISSN: ISSN 0006-3495
PubMed: 1477273
Page generated: Tue Dec 15 05:22:10 2020

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