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Sodium in PDB 1a2c: Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga

Enzymatic activity of Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga

All present enzymatic activity of Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga:
3.4.21.5;

Protein crystallography data

The structure of Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga, PDB code: 1a2c was solved by J.L.Rios-Steiner, M.Murakami, A.Tulinsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 71.970, 72.480, 72.240, 90.00, 100.93, 90.00
R / Rfree (%) n/a / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga (pdb code 1a2c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga, PDB code: 1a2c:

Sodium binding site 1 out of 1 in 1a2c

Go back to Sodium Binding Sites List in 1a2c
Sodium binding site 1 out of 1 in the Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Thrombin Inhibited By AERUGINOSIN298-A From A Blue-Green Alga within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Na626

b:28.0
occ:1.00
O H:LYS224 2.3 33.8 1.0
O H:ARG221A 2.6 34.7 1.0
O H:HOH503 2.9 22.7 0.8
C H:LYS224 3.4 31.9 1.0
C H:ARG221A 3.5 34.0 1.0
O H:HOH540 3.5 33.1 0.8
N H:ARG221A 3.8 32.6 1.0
N H:LYS224 3.9 31.8 1.0
C H:ASP221 4.0 32.8 1.0
CA H:ASP221 4.1 32.0 1.0
CA H:LYS224 4.2 31.2 1.0
O H:HOH482 4.3 18.7 0.7
N H:TYR225 4.4 30.6 1.0
CA H:ARG221A 4.4 33.5 1.0
N H:ASP222 4.4 34.4 1.0
OD1 H:ASP221 4.4 32.1 1.0
N H:GLY223 4.5 34.4 1.0
O H:ASP221 4.5 33.3 1.0
CA H:ASP222 4.6 35.3 1.0
CA H:TYR225 4.6 27.3 1.0
O H:TYR184A 4.7 26.4 1.0
OD2 H:ASP189 4.7 27.6 1.0
CB H:LYS224 4.7 31.4 1.0
C H:ASP222 4.7 34.8 1.0
N H:ASP221 4.8 29.9 1.0
C H:GLY223 5.0 32.6 1.0

Reference:

J.L.R.Steiner, M.Murakami, A.Tulinsky. Structure of Thrombin Inhibited By Aeruginosin 298-A From A Blue-Green Alga J.Am.Chem.Soc. V. 120 597 1998.
ISSN: ISSN 0002-7863
Page generated: Tue Dec 15 05:21:35 2020

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